Neorhizobium galegae bv. orientalis HAMBI 540: RG540_CH40990
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Entry
RG540_CH40990 CDS
T03244
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ngg
Neorhizobium galegae bv. orientalis HAMBI 540
Brite
KEGG Orthology (KO) [BR:
ngg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngg03019
]
RG540_CH40990 (hrpB)
Enzymes [BR:
ngg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RG540_CH40990 (hrpB)
Messenger RNA biogenesis [BR:
ngg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RG540_CH40990 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
AAA_30
AAA_25
AAA_19
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CDN50248
UniProt:
A0A068SVJ8
LinkDB
All DBs
Position
complement(4213130..4215616)
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AA seq
828 aa
AA seq
DB search
MASAHAAGPITKNLPRLPVTEVLGDIMQALADGTRAVLSAPPGAGKTTLVPLALLDQVWC
TGKIILLEPRRLAARAAASRMASLLGEQVGEQVGYRMRLDNKVSAKTRVEVVTEGVFARM
ILDDPELTGVSAVIFDEFHERSLDADFGLALALDVQSALRDDLRILVMSATLDVERVAGL
LGEPPVIKSEGRTFPIDIQHRDRAPNERIEDAMTRAIVEAHANDTGSILAFLPGQAEILR
TAERLANRFGPETVVVPLYGNLSQREQDMAIRPAPAGQRKIVLATSIAETSITIDGVRIV
IDSGLQRLPVFEPSTGITRLETVRVSRASADQRAGRAGRTEPGIAMRLWHPGQTAALQAF
TPPQILASDLSGLVLDLAHWGVQDPKGLAFLDPPPGPAFNEAKVLLTQLGALDPQGGLTE
KGRLMRELALPPRLAAMAISAAEEGFGRQACLLAVLLTEQGLGGSDIDLDERLRRFRNER
GDRADAARKLSDRIFSNLPRRSQSTETVLAGRLLLHAYPDRIALQRGGRGRFVMANGRGA
ELQETERLAASQMLVIADLTGRAAQARILAAAEISRADVEVELAGAIRESEECFFDRPSR
QVRARKVTRLGAIIFEERPLPRPSGERAAQALADGVRELGLQALPFSKEGAQLRDRIGFL
NRSIGEPWPDMSDEALLARLDDWFVPFQGGASGIDTINPGSLSDGLRSLIPHEVSQDLNK
LAPTHFEAPTGERHPIRYDGEEPVLAIRVQELFGLKKHPAIAGGKLPLLLELNSPAHRPI
QTTRDLPGFWAGSWKDVRAEMRGRYPKHPWPEDPAEAVPTIRAKPRGT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagcgcatgcggcaggtccaatcacgaagaacctgccaaggcttcccgtcacc
gaggttctcggcgatatcatgcaagcgctcgccgatggcacgcgcgccgtgctttccgcc
ccaccgggcgccggcaagacgacgctggtgccgctggcgctgctcgaccaggtctggtgc
accggaaagatcatcctgctcgaaccgcggcggctggcggcgcgcgcggctgcgtcccgc
atggcgtcgctgctcggcgaacaggtcggcgaacaggtcgggtaccggatgcggctcgac
aacaaggtctcggcgaagacccgtgtcgaagtggtaaccgagggcgtattcgcccggatg
atcctcgacgatccggagctcaccggcgtttccgccgtcatcttcgacgaattccacgag
cggtcgctcgacgcggatttcggtctggcgttggcgctcgacgtgcaatcggcgctgcgc
gacgacttgaggatcctcgtcatgtcggcgacactggatgtggagcgggtggcgggactg
cttggcgagccaccagtcatcaagagcgaaggccggacgtttccgatcgacatccagcat
cgcgaccgcgcgccgaacgaaaggatcgaagacgcgatgacgcgggcgatcgtcgaggcg
cacgcgaatgacacgggttccatcctcgccttcctgccgggccaggcggaaatcctgcgg
actgccgagcggctcgcgaaccggttcgggccggagaccgtggtggtgccgctttacggc
aatctttcccagagggagcaggatatggcgatccggccggcgcccgccggacagcgcaag
atcgtgctggccacatcgatcgccgaaacctccattactatagacggagtccggatcgtc
atcgacagcgggctgcagcgcctaccggtgttcgagccctcgaccgggatcactcggctg
gagacggtgcgtgtttcccgcgcctcggccgaccagcgggcgggtcgtgccggccgtacc
gaaccgggcatcgcgatgcgcctctggcatccgggacagacggcagcgctgcaggcgttc
acgccgccgcagattctcgcgagcgacctttccggtctggttctcgatcttgcccattgg
ggcgtccaggatccgaagggacttgcgtttctcgatccgcctcccgggccagccttcaac
gaggcaaaggtgctgctgacccagctcggcgcactcgacccccagggcgggctgacggaa
aagggccggttgatgcgggaactggcgcttccgccgcggcttgcggccatggcgatctcg
gcggcggaagagggtttcggcaggcaggcctgtctgcttgccgtgcttctgaccgaacag
gggctcggcggcagcgatatcgatctcgacgaacggttgcggcggttccgcaacgaacgc
ggcgacagagccgatgcggcccgtaaactatcggatcggattttttcgaacctgccgagg
cgatcgcagtcgacggaaacggttctcgccggccggcttctgctgcatgcctatccggac
cggatcgcgctgcagcgcggcgggcgcgggcgtttcgtgatggcgaatgggcgtggcgcg
gaactgcaggagaccgagcggttggcggcatcgcagatgctggtcatcgccgacctgacc
ggtcgggcagcacaggcgcgtattctcgcggcggcggagatcagccgggcggatgtggaa
gtggagcttgccggcgcaatccgcgagagcgaggaatgtttcttcgaccggcccagccgg
caggtgcgcgcccgcaaggtgacccggctcggcgctatcatcttcgaagaaaggccactg
ccccggccgagcggcgaacgggcggcgcaggcgcttgcggacggcgtgcgggaactgggg
cttcaggccctgccattctccaaggaaggcgcgcagctgcgcgaccggatcggcttcctg
aaccggtcgatcggcgagccttggccggatatgagcgacgaggcgctgctcgcccgactc
gacgactggttcgttcccttccagggcggtgcatcgggcatcgataccatcaatcccggc
agcctttcggatgggctgcgttcgctcattccgcatgaggtctcccaggatctcaacaag
ctggcgccgacgcattttgaggcgccgaccggcgagcggcatccgatccgctatgacggc
gaggagccggtcctggcgatccgggtgcaggaactgttcgggctgaagaaacatccggcg
attgcgggcgggaaactgccgctgctgctcgaactcaactcgccggcgcatcggccgatc
cagacgacacgggacctgcccggtttctgggccggttcctggaaggatgtgcgggccgaa
atgcgcggccgttatcccaaacatccctggccggaggatccggcagaggctgtgccgacg
atacgtgccaaaccgcgcgggacgtga
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