Nannospalax galili (Upper Galilee mountains blind mole rat): 103724455
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Entry
103724455 CDS
T03372
Symbol
Ddx39b
Name
(RefSeq) DExD-box helicase 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03013
Nucleocytoplasmic transport
ngi03015
mRNA surveillance pathway
ngi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103724455 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
103724455 (Ddx39b)
03015 mRNA surveillance pathway
103724455 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103724455 (Ddx39b)
03041 Spliceosome [BR:
ngi03041
]
103724455 (Ddx39b)
Enzymes [BR:
ngi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103724455 (Ddx39b)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103724455 (Ddx39b)
Spliceosome [BR:
ngi03041
]
Complex C
Other components
EJC/TREX
103724455 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103724455 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
103724455
NCBI-ProteinID:
XP_008819773
UniProt:
A0A8C6RVS3
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgatgttgacaatgaactcttggactatgaagatgatgaggtggagacg
gcagccgggggagacggggccgaagcccctgccaagaaggatgtcaagggctcctacgtc
tccatccacagctctggctttcgtgacttcctgctcaagccggagttgcttcgagccatt
gtcgactgtggctttgagcatccatccgaagtccagcacgaatgcatccctcaggccatt
ctggggatggatgtcctgtgccaggccaagtcaggcatgggaaagacggcagtgtttgtc
ttggccacactgcagcagctggagccggttactggacaggtgtctgtcctggtgatgtgt
cacactagggagttggcttttcagatcagcaaggaatatgaacgcttctcaaaatacatg
ccgaatgttaaggtggcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcacatcgtcgttgggactcctggccgcatcctagccctagct
cggaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccgc
aagttcatgcaagatccgatggagatcttcgtggatgatgagacgaagttgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctagatgtccttgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgccctggcccagctcctcgtggaacagaacttcccagccattgccatccaccgtggg
atgccccaggaggagaggctctctcggtatcagcagttcaaagatttccagcggcgaatt
cttgtagctaccaacctgtttggccgtggcatggatatcgagcgagtgaacattgccttc
aattatgacatgccggaggactccgacacctacctgcaccgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagacgagaacgacgccaagattctc
aatgatgtgcaagaccgatttgaggtcaacatcagtgagctgcccgacgagattgacatc
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
