Nannospalax galili (Upper Galilee mountains blind mole rat): 103725009
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Entry
103725009 CDS
T03372
Symbol
Ddb1
Name
(RefSeq) damage specific DNA binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03420
Nucleotide excision repair
ngi04120
Ubiquitin mediated proteolysis
ngi05161
Hepatitis B
ngi05170
Human immunodeficiency virus 1 infection
ngi05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103725009 (Ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
103725009 (Ddb1)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
103725009 (Ddb1)
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
103725009 (Ddb1)
05161 Hepatitis B
103725009 (Ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ngi04121
]
103725009 (Ddb1)
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103725009 (Ddb1)
Ubiquitin system [BR:
ngi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
103725009 (Ddb1)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
103725009 (Ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
103725009 (Ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Beta_propel
Motif
Other DBs
NCBI-GeneID:
103725009
NCBI-ProteinID:
XP_008820561
UniProt:
A0A8C6QMR1
LinkDB
All DBs
Position
Un
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELVGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFPSSTAPRET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTIEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacggcgcagaagcccaccgcggtgaacggctgtgtgacc
ggacactttacttccgcagaagacttgaacctgctgattgccaaaaacacgagattagag
atctatgtggtcactgctgaggggcttcggcctgtcaaagaggtgggcatgtatggaaag
attgctgtcatggagcttttcaggcccaagggggagagcaaagacctgctgttcatcttg
actgcaaagtacaatgcctgcatcctggagtataagcagagtggcgagagcattgatatt
atcacacgtgcccacggcaatgtccaggaccgtattggccgcccctcagagactggcatt
attggcatcattgaccctgagtgccggatgattggcctgcgactgtatgatggtcttttt
aaggtcattccactagaccgggaaaataaagagctcaaggcctttaacatccgcctggag
gaattgcatgtcattgatgtcaagttcctgtatggttgtcaggcacctaccatttgcttt
gtctaccaggatcctcaggggcggcatgtgaaaacctatgaggtgtctctgcgagagaag
gagttcaacaagggcccttggaaacaggagaatgtagaggctgaagcttcaatggtgatt
gcagttccagagccttttggaggtgccatcatcattggacaggaatccatcacctatcac
aatggtgacaaatacctggcaattgcccctcctatcatcaagcaaagcacgattgtgtgc
cataatcgggtggatcctaatggctcacgataccttctgggagatatggaaggacgcctc
ttcatgctgcttttggagaaggaagagcagatggatggcactgtcaccctcaaggatctc
cgtgtggaactccttggagagacctccattgcagagtgcctaacataccttgacaatggt
gttgtgtttgttgggtctcgcctaggtgactcccagcttgtaaagctcaacgttgacagc
aatgaacagggttcctatgtagtggccatggaaacctttaccaacttaggaccgattgtg
gatatgtgtgtggtggacttggagaggcagggacaggggcagctggtcacttgctctggg
gctttcaaggaaggttccttgcggatcatccggaatggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtttatggccattgcggtctgaccccagtcgggag
actgatgacactttggtgctctcttttgtgggccagacacgagttctcatgctaaatgga
gaggaagtggaagagacggaactggtgggctttgtagacgatcagcagactttcttctgt
ggcaacgtggctcatcagcaacttattcagatcacttcagcatctgtgaggttggtctct
caagagcctaaagctctagttagtgagtggaaggagcctcagggcaagaacatcagtgtg
gcctcctgtaacagcagccaggttgttgtcgctgtgggaagggctctctattaccttcag
atccatccacaggagctccggcagatcagtcacacggagatggaacatgaagtggcttgc
ttggacatcaccccattaggggacagcaatgggctgtccccactttgtgccattggcctc
tggacagacatctcagctagaatcttgaaactgccatcctttgaactactgcacaaggag
atgctgggtggagagatcattcctcgctccatcttaatgacaacgtttgagagtagccac
tacctcctttgtgccttgggagatggagctcttttctactttgggctcaacattgagaca
ggcttgctgagcgaccgtaaaaaggtgactttgggcacccagccaacagtgttgaggact
ttccgttccctttctaccaccaacgtctttgcttgctctgaccggcccactgtcatctat
agcagcaatcacaagctggtcttctccaatgtcaacctcaaggaggtgaactacatgtgt
cccctcaactcagatggctatcctgacagcttggcactggccaacaatagtaccctcacc
attggcaccatcgatgaaatccagaagctccacattcgcacagtccccctctacgaatct
cccaggaagatttgctaccaggaagtgtcccagtgctttggggtcctctccagccgcatt
gaagtccaagacaccagtggaggcacaactgctctgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttccctagcagtactgctcctcgtgagacc
tcctttggagaagaggtggaggtacacaacctcctcatcatcgatcagcacaccttcgaa
gtgcttcatgcccaccagtttctacagaatgagtatgccctcagcctggtctcctgcaag
ttgggcaaagaccccaatacatacttcattgtgggcacagccatggtatatcctgaagag
gcagagcccaagcagggtcgtattgtggtctttcagtattctgatggaaaactgcagact
gtggctgaaaaggaagtgaaaggggctgtgtactctatggtggagtttaatgggaagctg
cttgccagcatcaatagcacggtgcggctttatgagtggaccatcgagaaggaactccgc
actgagtgtaatcactacaacaacatcatggccctctacttgaagaccaagggagacttc
atccttgtgggcgacctcatgcgctcagtactgctgcttgcctacaagcccatggaagga
aactttgaagagattgcccgagacttcaatcctaactggatgagtgcagtagaaatcttg
gatgatgacaatttcctgggggctgagaatgcctttaatttgtttgtgtgtcagaaggac
agcgctgccactaccgatgaggagcggcagcacctgcaggaagttggtctcttccacctg
ggcgaatttgtcaatgtgttctgccacggctctctggtcatgcagaatctgggcgagact
tctaccccaacacagggctcggtcctctttggcacggtcaatggcatgattggactggtg
acttcactgtcagagagctggtacaacctcctgttggacatgcagaaccgactcaataag
gtcatcaaaagtgtgggcaagattgagcactccttttggagatcctttcacactgagcga
aagacagaaccggccacaggcttcatcgatggggacctgattgagagtttcctggatatc
agccgtcccaagatgcaggaggttgtggcaaacctacaatatgacgatggcagtggtatg
aagcgggaggctactgcagacgacctcatcaaagttgtggaggagctaactcggatccat
tag
DBGET
integrated database retrieval system
