Nannospalax galili (Upper Galilee mountains blind mole rat): 103726070
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Entry
103726070 CDS
T03372
Symbol
Cnot4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103726070 (Cnot4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngi03000
]
103726070 (Cnot4)
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103726070 (Cnot4)
04121 Ubiquitin system [BR:
ngi04121
]
103726070 (Cnot4)
Enzymes [BR:
ngi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103726070 (Cnot4)
Transcription factors [BR:
ngi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103726070 (Cnot4)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103726070 (Cnot4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103726070 (Cnot4)
Ubiquitin system [BR:
ngi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103726070 (Cnot4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
103726070
NCBI-ProteinID:
XP_008821682
LinkDB
All DBs
Position
Un
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAGTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAASTNANSLNSTFSVVPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSVSW
DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSSAPSQTHHSAPF
STQIPLHRASWSPYPPPSNPSNFHSPPPGFQTAFRPPSKTPTDLLQSSTLDHH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgcaaaggaagaccctgtggaatgccctctttgcatggagccc
ttggagatagacgatatcaactttttcccttgcacctgtggctaccagatttgccgattt
tgttggcatagaattcgcactgatgagaacgggctttgtcctgcgtgtagaaagccatat
ccagaagaccctgcagtttataaaccactctcccaggaagaattgcaaaggataaaaaat
gagaaaaaacagaaacaaaatgagagaaaacagaaaatctcagaaaatcgcaaacatttg
gctagtgtacgtgtggtacaaaaaaacctcgtctttgtagtaggtctgtcacagcgccta
gcagacccagaagttttaaaacgaccagagtattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccgagtgccagtgcttat
gtaacctatatccggtcagaagatgctctcagagccatacagtgtgtcaacaatgtggtg
gtagatggcagaacacttaaggcatctttaggcacaacaaaatattgcagttacttctta
aagaatatgcagtgtccaaagcctgactgcatgtatctacatgaattgggggatgaggca
gccagcttcacaaaagaggaaatgcaggcgggtaaacaccaagaatatgaacagaagcta
ctccaagaattatataaattaaatcccaattttcttcagctatctacgggttcagttgat
aagaataagaacaaagtgacaccactgcagaggtatgatacccccattgacaaaccttcc
gattctctcagtatagggaatggtgataattcccagcagatatctaacagtgatacgcct
tcaccaccacctggtttatcaaaatccaatcctgtcatccccatcagttcatccaatcac
agtgcaaggtccccttttgaaggggcaggaacagagtcacagtcattattctcagacaat
tttcgtcatcccaaccctataccaagtgggcttcctccttttcccagctctccacagaca
tccagtgattggcctacagctccagaaccacagagcctcttcacatcagaaacaatccca
gtatcatcgtctacagactggcaagcagcatttggctttggttcttctaaacaaccagag
gatgacttgggttttgatccctttgatgtcactcgcaaagccttagcagacctgattgag
aaggaactgtccgtccaagaccaaccttccctgtctcccacatctcttcagaactcctct
tcacacactacaaccgccaaaggtccaggctctggattcctgcaccctgctgcatctaca
aatgccaactctctcaatagcaccttttcagtcgtgccacagaggttccctcaatttcag
cagcaccgagcagtttataattcgttcagttttccaggccaggcagcccgatatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaatcccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatcccc
atagcagacaacagcagttctgtggagagtttaaacatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcttcttccccc
tccaacgccaaccacagtgcaccaacgtccaacactgccaccaccgacagcgtgagttgg
gacagccctggcagctggacagacccagccatcatcacaggtattccagcatcttcagga
aacagtttagactctcttcaagacgacaatcctccacactggctaaaatcccttcaggcc
ctcacagagatggatggccccagctcagctccgtcacaaacccaccacagcgcccccttc
agcacacagatccctctgcacagagccagttggagtccttatccgcccccttcaaaccct
tccaacttccactccccacccccaggctttcagacagccttcagaccccccagcaaaacc
cccacagatctactacagagttcaacactggaccaccactag
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integrated database retrieval system
