Nannospalax galili (Upper Galilee mountains blind mole rat): 103726675
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Entry
103726675 CDS
T03372
Symbol
Smg7
Name
(RefSeq) SMG7, nonsense mediated mRNA decay factor
KO
K14409
protein SMG7
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103726675 (Smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103726675 (Smg7)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
103726675 (Smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
103726675 (Smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
103726675
NCBI-ProteinID:
XP_008822517
LinkDB
All DBs
Position
Un
AA seq
1185 aa
AA seq
DB search
MNLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQESYNTYPL
PAVKVSMDWLRLRPKVFQEAVVDERQYIWPWLISLLNSFHPHEDDLSNTNATPLPEEFEL
QGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLMQCENEVG
KLLFITEIPELILEDPSEAKENLILQETSVIESLAVDGSPGLKSVLSTGRNPSNNCDTGE
KPVVTFKENIKPREVNRDQGRSFPPKEVRRDYSKGITVTKNDGKKDNSKRKAETKKCTLE
KLQETGKQSVAVQVKSQTELRKTPVSEARKTPVTQTPSQASNSQFIPIHHPGAFPPLPSR
PGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQQ
RPSGPGPMNQGPQQSQPPSQPPLTSLPAQPTAQSTSQLQVQTLAQQQSPTKVMPALGKSP
PHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVMQQ
QPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSFSMADNRAVMTQQPNMDRRSKRSPGVFR
PEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLPGRS
LFKSLLEKPSELMSHSSSFLSLTGFSLNQERHPNSSMFNEVYGKNLTANSRAELNPSVAS
QETSLYSLFEGTPWAPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSAPFSNFGPI
GTPDNRDRRPADRWKTDKPAMGGFGVDYLSAASSSESSWHQASTPSGTWTGHGPSMEDSS
AVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcagagcgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattctaagctgggtccagctgaggtctggacatccaggcaggctctgcaggacttgtac
cagaaaatgctagttactgatttggaatacgctttagacaagaaagtagaacaggatctc
tggaatcatgcctttaagaatcagatcacaacactacaaggccaagcaaagaatcgagca
aacccgaatcggagtgaagttcaggcaaacctttctctgttcctagaggcagctagtggc
ttctatactcagttattacaagaactgtgtacagtgtttaatgtagatttgccatgccgt
gtgaagtcttcccagttgggaattattagcaataaacagacgcataccagcgccatagta
aagccacagtccagctcctgttcgtacatttgccagcactgcctcgtccaccttggagac
attgctcgatacagaaaccagaccagccaggcagagtcatactataggcatgcagctcag
cttgtcccctccaatggtcagccttacaatcagttggctatcttagcttcttccaaagga
gaccatctgaccacaattttctactactgcagaagcattgctgtgaagttccctttccca
gctgcctccactaatctacaaaaagcactttctaaagcactggaaagccgggatgaggtg
aaaaccaaatggggtgtatctgactttatcaaggcctttattaaattccacggtcatgtc
tacctgagtaagagcttggaaaagttgagccctcttcgagagaaattggaagaacagttt
aagaggctgctattccaaaaagctttcaactctcaacagttagttcatgtcactgtcatt
aatctgtttcaacttcatcaccttcgtgactttagcaatgaaacggagcagcatagttat
agccaagatgagcagctctgttggacacagttgttggccctcttcatgtcttttctgggt
atcctgtgcaagtgtcctctccagaacgagtctcaggagtcctacaatacctatcccctt
cctgcagtcaaggtctccatggactggctgaggctcagacccaaagtctttcaggaggca
gtggtggatgaaagacagtacatttggccctggctgatttctcttttaaatagtttccat
cctcatgaagatgatctctcaaatactaatgccaccccacttccagaggagtttgagtta
caaggattcttggctttaagaccatctttcaggaacttggatttttccaaaggccatcag
ggtattacaggagacaaagagggtcagcagcgacgaataagacagcagcgcttgatctct
atagggaaatggattgctgacaatcagccacggctgatgcagtgtgaaaatgaggtaggg
aaattgttgtttatcacagaaattccagaattaatactagaggaccccagtgaagccaaa
gagaacctcatcctacaagaaacatctgtgatagagtcactagctgttgatggaagccca
ggactgaaatcagtgctatctacgggccgaaatccaagcaacaactgtgacacaggagag
aaaccagtggttaccttcaaagagaatattaagccacgagaagtgaacagagaccaagga
agaagttttcctcccaaagaggtgagaagggactatagcaaaggaataactgttactaag
aatgatggaaagaaggacaacagcaagaggaaagctgaaaccaagaaatgcaccttagaa
aagttacaggaaacaggaaagcagagtgtggcagtgcaggtaaaatcccagacagaacta
agaaagactccagtgtctgaagccaggaaaacacctgtaactcaaactccaagtcaagca
agtaactctcagttcatccctattcatcaccctggagccttccctcctctgcccagtcga
ccagggttcccgcccccaacatatgttatcccccctcctgtggcattttctatgggctca
ggttacaccttcccagctggtgtttctgtcccaggaacctttcttcagcctacagctcac
tctccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttacagccagcaa
cggccctctggaccagggccaatgaaccagggacctcaacaatcacagccaccttcccag
ccaccccttacatctttaccagctcagccaacagcacagtctacaagccagttgcaggtt
caaactctagctcagcaacaatcccctacaaaagtcatgccagctttggggaaaagcccg
cctcaccactctggattccagcagtatcaacaggcagatgcctccaaacagctatggaat
ccccctcaggttcaaggcccactagggaaaatcatgcctgtgaaacagccctactacctt
cagacccaagaccctataaaactgtttgaaccatcattgcaacctcctgtaatgcagcag
cagcctctagagaaaaaaatgaagccttttcccatggagccatataaccataatccctca
gaagtcaaggtcccagaattctactgggattcttcattcagcatggctgataacagagct
gtaatgacacagcaaccaaatatggaccgcaggagcaaacggtcaccaggagtcttccgt
ccagagcaggatcctgtgcccaggatgccatttgaggaccccaagagctcccctctgctt
cctccggacctgttaaagagtctggctgccttggaggaagaggaagagctgatcttttct
aaccctcctgatctttacccagctctgctgggtcctctggcctctcttcctggacgaagc
ctctttaaatccttattggagaagccctcagagctcatgtcacattcgtcctctttccta
tccctcaccggattctctctcaatcaggaaagacacccaaatagtagtatgttcaatgaa
gtatatgggaaaaacttgacggccaactccagggcagaactgaacccctctgtggcctcc
caggaaacatcactgtattccctttttgaagggactccatgggctccatcacttcctgcc
agttcagaccattcaacaccagccagccagtctcctcattcctctaaccccagcagcctg
cccagttctcctccaacacacaaccataattctgctccattctctaattttggacccatt
gggacaccagataacagagataggaggcctgcagatcgctggaaaactgataaaccagct
atgggtggatttggcgttgattatctctcagcagcatcatcttctgagagcagttggcat
caggctagcactccaagtggcacctggacaggccatggcccctccatggaggattcctct
gctgtcctcatggaaagcctaaagtctatctggtccagttccatgatgcatcctggacct
tccgctctggagcagttgttaatgcagcagaagcagaaacagcagcggggacaaggcacc
atgaaccctccacactga
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integrated database retrieval system
