Nannospalax galili (Upper Galilee mountains blind mole rat): 103727406
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Entry
103727406 CDS
T03372
Symbol
Ythdc2
Name
(RefSeq) YTH domain containing 2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngi03041
]
103727406 (Ythdc2)
Enzymes [BR:
ngi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103727406 (Ythdc2)
Spliceosome [BR:
ngi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103727406 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
Ank_4
AAA_29
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
103727406
NCBI-ProteinID:
XP_008823476
UniProt:
A0A8C6RHR1
LinkDB
All DBs
Position
Un
AA seq
1427 aa
AA seq
DB search
MSRPSSVSPRPPARGSSGGPAPCGPGGGGRAKGLRDIRIDEEVKIAVNIALERFRYGDQR
EMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTHN
TKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRG
ESEFDSFRQSLPVFEKQEEIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCR
IFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMA
GDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGS
CPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMSKYKKEKQREEKQQTTLTEWYSAQENTF
KPESQRQRAVPNVSEEYDLLDDSGDAVFSQLTEKDANCLEPWLIKEMDACLSDIWLHKDV
DAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSKASNGWM
ALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDE
KVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLH
SNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNLVTM
LKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKL
LAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLG
KMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLR
AFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVN
TNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANG
QAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRA
DGIPNDSSDSEMEDRTTANFTALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPS
KPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKSS
TDTEFADESVAERVLMKSPSPALHPPQKYKDRGILHPKRSSDDRSDQSSVKSADSSSYPS
PCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRA
FWESSMVYLVFSVQGSGHFQGFSRMASEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQF
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTAD
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtttcgccgcgcccgccggctcgcggcagcagcggcggcccc
gctccctgcggtcctgggggcggtggccgggcgaagggactcagagacattcgtatcgac
gaggaggtgaagatcgccgtcaacatcgctctggagcgcttccgctacggtgaccagaga
gaaatggaatttccttcttctttgaccagtactgaaagagcctttattcatcgactgagt
cagtctcttggtctagtctctaaaagtaaaggaaagggagcaaatagatacctaactgtg
aagaagaaagatggatctgaaacagctcatgcaatgatgacctgtaatttgacccataat
acaaagcatgctgttaggagtctgattcagagatttcctgtgaccaacaaagaacgtact
gaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgagaaccgagaa
atgagtaagacaagcgggcgactcaacaatggcatacctcaagttccagtgaaaagggga
gaatcagaatttgactcattcaggcaatctttaccagtttttgagaaacaagaagaaatt
gttaaaataattaaggataataaagtagttttgattgtcggagaaactgggtctggaaag
actacacagattcctcagttccttttagatgattgctttaaaaatggcatcccctgccgt
atattctgtactcaaccacgacgattagcagctattgctgtggctgaaagagttgctgca
gagagaagggaaaggattggtcaaaccattggctatcagatccgattagaaagcagggtt
tctccaaagacacttttgacattttgcacgaatggggtattgcttcgtacactgatggca
ggtgatagcacattgtcaactgtgacacatgttattgtggatgaagtacatgaaagggat
cgatttagtgattttttacttacaaagttaagagatttgttacaaaagcacccaactctg
aaactaattctttctagtgctgccttggatgtaaatctctttataagatattttggaagt
tgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttctggaagat
attttaagaactactggatatacaaacaaagaaatgtcaaagtacaaaaaagaaaagcaa
cgagaggagaaacaacagactacactcacagagtggtactcagctcaagagaacactttc
aagcctgaatctcagaggcagagggctgttccaaacgtatctgaagagtacgatttattg
gatgatagtggtgatgctgtctttagtcagctgacagaaaaagatgcgaattgccttgaa
ccatggttaataaaggaaatggatgcctgcctttctgacatttggctgcataaagatgtt
gatgcctttgctcaggtctttcatcttattttaactgaaaatgttagtgttgattacagg
catagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggttttacaagtcaa
gtagagcagttgattagtatgggagctaatgtccatagtaaagcatcaaatggctggatg
gctttagattgggctaaacactttggacagactgaaattgtggatcttctagaatcttac
agtgcttcactggaatttggaaatctagatgaaagttctttggttcaaacaaatggaaat
gaccttagtgcagaagacagagagctcctgaaagcttatcatcatagttttgatgatgaa
aaagtagacttggatttgatcatgcatcttttatataatatctgccatagttgtgatgct
ggtgcagtattaatttttcttcctggatatgatgaaattgttggtttgagggatcgcatc
ctatttgatgacaagcggtttgctgataatacacacagataccaagtttttatgcttcat
tcaaatatgcagacatctgatcaaaagaaggtattgaaaaatccacctgcaggtgttcga
aaaataatcctttctaccaatattgctgaaacaagcatcacagtcaatgatgttgtcttt
gttattgattctggtaaagtgaaagagaaatcctttgatgcactgaatcttgttacaatg
ttaaaaatggtatggatttccaaagctagtgctatacagcgaaaaggcagagctgggcgc
tgcagacctggaatttgtttccgtctatttagtagactccgatttcagaatatgttggaa
tttcagactccagaacttttgagaatgccattacaggagctttgtttacataccaaacta
ttagccccagttaattgtaccattgcggacttccttatgaaagctccagaacctccaccg
gctttaattgtaagaaatgctgtccagatgcttaagacaatcgatgcaatggatacatgg
gaagatctgactgaacttgggtatcatttggctgacttgccagttgaaccacatcttggt
aaaatggtcctatgtgctgttgttttaaagtgtctggatcccatcctcacaattgcctgc
acactagcttatcgagatccttttgtactgcctacccaggcctctcagaaacgtgcagct
atgctttgtagaaaacgtttcactgcagggactttcagtgaccacatggcacttcttaga
gcattccaggcatggcaaaaagcacgaagtgatgggtgggagagagccttttgtgaaaag
aattttctctcacaagctaccatggaaataattataggcatgagaacacagttgcttggt
caacttagagcatcaggttttgttagagcccgaggtggtggtgacattcgagatgttaac
acaaactctgagaactgggctgttgttaaagctgcattggtggcaggcatgtatcctaat
ctagtccatgtggacagagagaatgtagtattgacagggccaaaggaaaaaaaagtacga
tttcaccccacttcagttctcagtcagcctcagtataaaaagattcctccagccaatggt
caggcagcagcgatccaggcacttcccacagattggcttatttatgatgaaatgaccaga
gcccatagaatagctaatattagatgttgctcagcagtgacacctgtgactgtattggtg
ttctgtggaccagcgagactggcaagtaatgctctccaggaaccttcttcctttagagcg
gatggcatccccaatgacagtagtgatagtgaaatggaggacagaactactgctaatttt
actgctttgaaacttgatgagtggcttaatttcaaactagagccagaggctgccagttta
ttgctacagctcagacagaagtggcatagcttatttttacgccgaatgagagctccatct
aaaccttggtctcaagttgatgaagctactatacgagcaattatagctgttttaagtact
gaagaacagtctgcaggcttacaacaaccatctggaattggtcagaggccaagacccatg
tcgtcagaagaacttcctttggcttcatcttggaggtcaaataatagtaggaaaagctca
acagatactgaatttgctgatgaatctgtagcagaaagagtactgatgaaatctccatct
ccagccttacatccacctcagaagtataaagatagaggaattttacatcctaaacggagc
agtgatgaccgatcagatcaatcctctgtgaaatctgcagacagcagcagttacccaagt
ccttgtgctagcccttctcctccatcctcaggaaagggctcaaagtctccttcaccaaga
ccaaacatgcctattcgttacttcataatgaagagtagcaatctgagaaaccttgaaatt
tctcaacagaagggtatctggtctacaacccctagtaatgagcggaagctaaatcgagcc
ttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggacatttccag
ggattttctaggatggcttctgagataggaagggagaagagccaggactggggatcagct
ggactgggtggagtatttaaagtggagtggatacgcaaagaaagccttccctttcagttt
gcacaccatttactgaacccttggaatgacaacaaaaaagtacaaataagcagagatggg
caggaactagaaccccaggttggtgaacagttgctccagttatgggaacgtcttccactg
ggagaaaaaactacagctgattga
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integrated database retrieval system
