Nannospalax galili (Upper Galilee mountains blind mole rat): 103729460
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Entry
103729460 CDS
T03372
Symbol
Lsm5
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018
RNA degradation
ngi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103729460 (Lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
103729460 (Lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103729460 (Lsm5)
03041 Spliceosome [BR:
ngi03041
]
103729460 (Lsm5)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103729460 (Lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
103729460 (Lsm5)
Spliceosome [BR:
ngi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103729460 (Lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
103729460
NCBI-ProteinID:
XP_008825757
UniProt:
A0A8C6RZU4
LinkDB
All DBs
Position
Un
AA seq
91 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaacgctaccactaacccctcgcagctcctgcctctagagcttgtggacaag
tgtataggatcacgaattcacattgtaatgaaaagtgataaagaaattgtcggcacactt
ctaggatttgatgactttgtcaatatggtgctggaagatgtcacagagtttgaaattaca
ccagaaggaagaaggattactaaattagatcagattttgctaaatggaaataatataaca
atgctggttcctggaggagaagggcctgaagtatga
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integrated database retrieval system
