Nannospalax galili (Upper Galilee mountains blind mole rat): 103729726
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Entry
103729726 CDS
T03372
Symbol
Col13a1
Name
(RefSeq) collagen type XIII alpha 1 chain
KO
K16617
collagen type XIII alpha
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103729726 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngi00536
]
103729726 (Col13a1)
Glycosaminoglycan binding proteins [BR:
ngi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103729726 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103729726
NCBI-ProteinID:
XP_017652301
LinkDB
All DBs
Position
Un
AA seq
724 aa
AA seq
DB search
MALPSILPTPGESSPLLESPGHTRAFQEALAASREHRKALPGEAGALITSTSEDLGQYTM
GLSRQFVLKLLDRPPPSPANNISSDIFQKWKFHLRRRREASETSPGCNCPPGPPGPTGRP
GLPGNKGAIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDG
KPGHPGPKGEMGLTGLRGQPGPQGQKGEKGQCGEYPHREYLSSTLAALRSNPTVPLKGEQ
SQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMP
GMPGKHGAKGVPGIAVAGMKGEPGTPGAKGEKGAVGSPGLSGLLGQKGEKGDAGNAIGGG
RGDPGPPGIPGPPGPKGEAGTDGQAGPPGQQGEKGQPGATGEKGPAGPKGSKGEPGKGEM
VDYNGNINEALQEIRTLALMGPPGLPGQTGPPGAPGTPGQKGEIGLPGPPGHDGDKGPRG
KPGDVGPTGPQGLPGKDGPPGMKGEPGPSGSPGEKGETGQAGPPGLDGPTGEKGEPGDEG
RPGATGLPGPIGLPGFTGEKGEAGEKGDPGAEIPGLPGPEGPPGPPGLQGVPGPKGEAGL
DGTKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM
TGPMGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGDDGLPVQG
CWNK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgccttccatcctccccactcccggagagtcctccccactactagagagccct
ggccacacaagggcattccaggaggccctggctgccagccgagagcacaggaaggctctg
cctggagaggctggggccctcatcaccagcacctcagaagacctgggtcagtacacaatg
gggctcagcagacagtttgttctaaagcttctggatcgtcccccaccctcaccagctaac
aacatctccagtgacatctttcagaaatggaagttccatctgcgaaggcgccgggaggcc
tcggagacgtctccaggatgtaactgcccaccaggacctcctggccccactggaagaccc
ggacttccggggaacaagggcgccattgggatgcctggacgtgtgggtgtcaagggtcaa
ccaggagagaagggtgcccctggagatgcaggcatgtccatcatcggtcctcgaggcccc
cctggccagccgggcacacgaggcttccctggatttccgggtcccattggtcttgatgga
aaaccgggccatcccggaccaaaaggggagatgggcctgacaggtctccgtggacaaccg
ggacctcaaggacaaaagggagaaaagggtcagtgtggcgagtacccacaccgggagtac
ctgagcagcacgctagcagctctgcgctccaacccaacagttcccctaaagggggagcag
agccaggctggcatccaaggccctccaggaccaccaggccccccaggaccaagtggacct
ctgggccatccaggactgccagggcccatggggccacctggcttacctgggcctcctgga
ccaaagggagacccggggatccagggctaccatggccgcaagggagaacggggcatgccg
gggatgccaggcaagcatggagccaagggagttccggggattgctgtagctgggatgaag
ggtgagccagggaccccaggagccaagggtgagaagggggctgtgggctctcctgggctc
tctggcctcctggggcagaagggagaaaaaggtgatgctggcaatgccattggaggaggt
aggggggacccaggtcccccagggatccctggacccccagggccaaagggagaagctggt
actgatggccaggctgggcccccaggacagcaaggagaaaaggggcagccaggagccact
ggggagaagggaccagctggccccaagggctccaagggtgaaccaggcaagggagagatg
gtagattacaatggaaacatcaatgaggctctccaggagatcagaacactggccttgatg
gggcctcctggtctacctgggcaaacaggcccacccggagctccagggactccaggccaa
aagggggagattggactgccaggccccccgggacatgatggtgataagggacctcgagga
aaaccaggagacgtgggccccactggcccccaaggactccctgggaaggatggacctcca
ggaatgaagggagagcctggaccctcagggagcccaggagagaaaggagagactggacaa
gcaggccccccgggtctagacggcccaactggggagaaaggagaaccaggtgacgaaggg
aggcccggagcgacaggattgcctgggcccatcgggctcccgggattcacaggagagaaa
ggagaagccggggagaaaggtgaccctggagcagagattcctgggctgccagggccagaa
ggacctcctggaccaccgggcctccaaggtgttcctggaccaaagggagaagcaggccta
gatggaaccaaaggagagaaaggtgcccagggagaaaaaggagaccgagggcctctgggg
ttgcctggagcttcaggtttggacggcaggcctgggccaccgggtactccaggaccaatc
ggagttccaggcccagctggaccaaagggcgaaaggggcagcaaaggagacccagggatg
actggaccaatgggagcagctggacttcctggtttacatggaccacccggggacaaagga
aaccggggagagagggggaagaaaggctctagagggcctaaaggggataagggggaccaa
ggagcacctggcctagacgccccctgtccattgggagacgatggcttaccagtccagggc
tgctggaacaagtga
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