Nannospalax galili (Upper Galilee mountains blind mole rat): 103730620
Help
Entry
103730620 CDS
T03372
Symbol
Upf3a
Name
(RefSeq) UPF3 regulator of nonsense transcripts homolog A (yeast)
KO
K14328
regulator of nonsense transcripts 3
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03013
Nucleocytoplasmic transport
ngi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103730620 (Upf3a)
03015 mRNA surveillance pathway
103730620 (Upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103730620 (Upf3a)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103730620 (Upf3a)
mRNA cycle factors
P-body specific factors
103730620 (Upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
103730620
NCBI-ProteinID:
XP_008827114
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MRSEEGAGGLGAAVSARGPSWRELSAADVQFRRESPRRVYSVPLTSSLSEGGAGKPREEK
KTALSKVVLRRLPPGLTKEQLEEHLRPLPAHDYFEVVAADLSLHPHLYSRAYINFRNPDD
ILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDVRTGSIEDDPEYKQFLET
YSLEEEKTSASPEMLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRIREEKREERRRRE
LEKKRLREEDKRKRREEERCKRKEADKQKKTEKEVRIKLLKKLEKGEEPTTEKTKERGEE
VGTGDEKQETCVTLKARPLKSLLETAGEKLQDGSDKEQRDKRFQENESETPRCHPDGCTK
HSIHSGFARFSRRNEGKPKWGKGSTQDRGKKGSQDGGVAVEMAERKSGEQKEGGSMGLRK
EHLGNKVL
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggaagagggggccggaggcctgggcgcagccgtgtccgcgcggggtccgagt
tggagggagttgtcggccgcagacgtccagtttcgccgagagtccccgcggagggtgtat
tcggtgcctctaacctcatccctcagcgagggcggagccggcaagcctcgcgaggaaaag
aagacggccctgagcaaggtggtgctccgcagactgccgccaggcctgaccaaggaacag
ctggaggagcacctgcgcccgctgcctgcgcacgattattttgaagtggtggctgcagac
ctcagtctccatcctcatctctactcaagagcatacattaattttaggaatcctgatgac
atccttctgttcagagatcgttttgatggatatatcttcattggcaataaaggcctggag
tatcctgcagtggtggagtttgctccattccagaagattgccaaaaagaagctgaagaaa
aaagatgtccggaccggaagcattgaagacgatccagaatataagcagtttctagaaaca
tacagtttggaggaagaaaaaaccagtgccagtcctgaaatgcttctaggggagatagaa
gcaaaaacaagagaactccttgccagaagaaccacacctcttttggaatatattaaaaat
agaaaattagaaaagcagagaattcgagaagaaaagcgagaagaacgaaggaggagggag
ttagagaagaagcgtttgcgggaagaagacaaaaggaaaagaagagaagaggaaagatgc
aaaaggaaagaagcggataaacaaaagaaaactgagaaagaagtaaggattaagcttctt
aagaaactagaaaagggagaagaaccaaccacagagaaaacaaaagaaagaggtgaggag
gttggtactggagatgaaaagcaggaaacctgtgtgactttgaaagccagacccctgaaa
agcctgctggagacagccggagagaagttacaggatggcagtgataaagagcaaagggac
aaaagatttcaagagaatgaatctgaaacaccaagatgtcacccagatggttgcacaaag
cacagcattcactctgggtttgccaggttttccagaaggaatgaaggcaagccaaagtgg
gggaagggatctactcaagatagagggaagaaggggagccaggatgggggagtcgctgtg
gagatggcagagagaaagagtggggagcagaaggagggtggcagcatgggactcagaaag
gagcacctgggaaacaaggttctgtag
DBGET
integrated database retrieval system
