Nannospalax galili (Upper Galilee mountains blind mole rat): 103731559
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Entry
103731559 CDS
T03372
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103731559 (Parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103731559 (Parn)
Enzymes [BR:
ngi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103731559 (Parn)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103731559 (Parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
PTHB1_pf
Motif
Other DBs
NCBI-GeneID:
103731559
NCBI-ProteinID:
XP_008828121
LinkDB
All DBs
Position
Un
AA seq
635 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALAYASPNTSKCPVMIPEDQKKF
IDQVIEKIESLLQSEEKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI
SKVDEEERKRREQEKHTKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPADLNDFKEMTTCVFPRLLDTKLMASTQPFKAIINNTSLAELEKRLKETPFNPPKVE
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMADYLGSLLGPSKICVSARSKLIEPFFNK
LFLMRIMDIPYLNLEGPDLQPKRDNVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA
FVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKRQEDKQMKRKWTEDGWKEVERKRSSM
QGVSQSLQSHYYHTNSFTCLAGKRSLSPDPEKADLEDRASGEISDSELEQTDACADSLPE
GRKKAKKLKRMKKELSPAGSGADSPATLFEVPDTW
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggagataatccggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggagttttcaggaatcagcgatggtccttcagtc
actgcattaacaaatggttttgacaccccagaagagaggtaccagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctctgcgcttttaagtatgaccacacagat
tcaaagtatataacgaagtcatttaacttctatgttttccccaagcccttcagtagatcc
tcaccagacgtcaagtttgtttgccagagctccagcattgacttcctagcgagccaagga
tttgacttcaataaagtttttcgcaatggaattccgtatttgaatcaggaggaagaaagg
cagctgagagaacagtatgatgaaaaacgttctcaggccaatggggcaggagctctggcg
tatgcgtcccctaacacttcaaaatgtcctgtgatgattcctgaggatcagaagaagttt
attgatcaagtaatagagaagatagaaagtttgctacagagtgaagagaagaacctggat
ttggagccatgcactgggttccaaagaaaactaatttatcagactttgagctggaagtat
cccaaaggcattcatgttgagaccttagaaactgaaaagaaggagcgatacatagttatc
agcaaagtagatgaagaagaacgcaaaagaagagaacaggagaaacacacaaaagagcag
gaggagctgaatgatgctgtgggattttcaagagtcatccatgccattgctaattcgggg
aagctagttatcggacacaatatgctcttggatgtcatgcatacaattcatcagttctac
tgtcccctgcctgcggacttgaatgactttaaggagatgacaacatgtgtcttccccaga
ctcttggatactaaattgatggccagcacacagccttttaaggctatcattaataacaca
tcccttgctgagttggaaaagcggttaaaagagacacctttcaaccctcctaaagttgaa
agtgcagaaggctttccaagctatgacacggcttctgagcagctccatgaggcaggttat
gatgcttacatcacaggactgtgcttcatctccatggcagattacctaggttctttactc
ggtccttcaaaaatttgtgtgtctgccagatcaaaactcattgaacccttttttaacaag
ttgtttcttatgaggatcatggatatcccctatctaaacttggaagggccagacttgcaa
cctaaacgtgataatgtgctccatgtgacattccccaaagaatggaaaaccagtgatctt
taccagcttttcagtgcctttggtaacattcagatatcttggattgatgacacatcagcc
ttcgtttctctcagccagcctgaacaagtacaaattgctgtcaacaccagcaaatatgca
gaaagctatcggatccagacctatgctgagtacgtggggaagaggcaggaagacaagcag
atgaagaggaaatggacagaagatggctggaaggaggtggagagaaagcggtccagcatg
cagggtgtgtcccagtcgctgcagagccactattatcacaccaacagcttcacctgctta
gctggaaaaagaagtctgagccctgatccagagaaagctgacctggaggacagagcatca
ggggagatctcagattctgagcttgagcagacagatgcctgtgcagactccctcccagag
ggaaggaaaaaggccaagaagttaaaaaggatgaagaaagagctttctccagcaggaagc
ggtgcagacagccctgccacactctttgaagtccctgacacatggtaa
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