Nannospalax galili (Upper Galilee mountains blind mole rat): 103734566
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Entry
103734566 CDS
T03372
Symbol
Smarca4
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03082
ATP-dependent chromatin remodeling
ngi04714
Thermogenesis
ngi05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103734566 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
103734566 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
103734566 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngi03021
]
103734566 (Smarca4)
03036 Chromosome and associated proteins [BR:
ngi03036
]
103734566 (Smarca4)
Transcription machinery [BR:
ngi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103734566 (Smarca4)
Chromosome and associated proteins [BR:
ngi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
103734566 (Smarca4)
Chromatin remodeling factors
BAF complex
103734566 (Smarca4)
PBAF complex
103734566 (Smarca4)
GBAF(ncBAF) complex
103734566 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Htt_C-HEAT
Motif
Other DBs
NCBI-GeneID:
103734566
NCBI-ProteinID:
XP_008831773
LinkDB
All DBs
Position
Un
AA seq
1646 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSTGHPMPTQG
PGGYPQDNVHQMHKPMESMHEKGMSEDPRYNQMKGMGMRSGAHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPAGTPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPEHLQMAVQGKRPMPGMQQQMPTLPPPSVSAAGPGPGPGPGPGP
APPNYSRPHGMGGPNMPPPGPSGVPSGMPGQPPGGPSKPWPEGPMANAAAPTSTPQKLIP
PQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRGLDPI
EILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCM
RRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAK
DFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ
KKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGE
PLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEE
EEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQAL
ARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLG
KTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF
VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP
RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILI
IRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEK
DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFEL
LDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNE
PGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL
CTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHSST
GSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRR
REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT
EKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQK
KRGRPPAEKLSPNPPSLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELI
RKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVR
QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR
AKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccacccctaggtggaactcctcggcccggcccttccccaggacct
gggccctcacctggagctatgctgggcccttccccaggcccttcaccgggctctgcccac
agcatgatggggcccagccctggacctccctccacaggacaccccatgccaacccagggg
cctggagggtaccctcaggacaacgtgcaccagatgcacaagcccatggagtccatgcat
gagaagggcatgtctgaagacccacgctacaaccagatgaaagggatgggcatgcggtct
ggggcccatgcaggcatggggcccccacccagccccatggaccagcactcccaaggttac
ccctcacccctgggtggctctgagcatgcctccagtcccgtgccagccagtggcccttcc
tcaggcccccagatgtcatctgggccagcaggaaccccgctggatggtgccgacccccaa
gccttggggcagcagaatcgaggccccaccccatttaaccagaaccagctgcatcagctt
cgagctcagatcatggcctacaagatgctggccaggggccaacccctgcctgaacatcta
cagatggctgtgcagggcaagcgaccaatgcctgggatgcaacagcaaatgccaacgcta
cctccaccttctgtgtctgccgcaggacctgggcctggccctggccctggtccaggacca
gcacctccaaattacagcaggccccatggtatgggaggacccaacatgcctcccccagga
ccctcgggtgtgccctccggtatgcctggtcagccccctggagggccttccaagccctgg
cctgaaggaccaatggccaatgctgctgcacccacgagcaccccacagaagctgatcccc
ccacagccaacaggccgcccttcacctgcgccccctgctgtcccacctgcggcctcacct
gtgatgccaccccagacgcagtccccggggcagccggcccagcctgcacccttggtgcca
ctgcaccagaagcagagtcgcatcacccctatccagaagccccggggcctggaccccata
gagatcctgcaggagcgggagtacaggctgcaggctcgcatcgcacaccgaattcaggaa
cttgaaaacctccctgggtccctggctggggatctgcgaaccaaagcaaccattgagctc
aaggcccttcggctgctgaacttccagaggcagctgcgccaggaggtggtggtgtgtatg
cgcagggatacagccctggagacagccctcaatgccaaggcctacaagcgcagcaagcgg
cagtccctgcgtgaggcccgtatcaccgaaaagctggagaagcagcagaagatcgagcag
gagcgcaagcgccgccagaagcaccaggaatacctcaacagcatcttgcaacatgccaag
gatttcaaagagtatcacaggtcagtcacaggcaaaatccagaaactcaccaaggcggtg
gccacctaccatgccaacactgagcgggagcagaagaaagagaatgaacggatcgagaaa
gaacgaatgcggaggctcatggctgaggatgaggagggctaccgcaagctcatcgaccag
aagaaggataagcgcctggcctacctcttgcagcaaacagatgaatatgtggccaatctc
acggagctggtgcggcagcacaaggctgcccaggttgctaaggagaaaaagaagaaaaag
aaaaagaagaaggcagaaaatgctgaaggacagacacctgcgattggaccagatggtgag
cctctggatgagaccagccaaatgagtgacctccctgtgaaagtgatccatgtggagagt
gggaagatcctaacaggcacagatgccccaaaagctgggcagctggaggcctggctggag
atgaacccagggtatgaagtagctccaagatcagatagcgaagagagtggctctgaagag
gaggaggaggaggaggaggaagaacagcctcagcctgcacagccccccacacttcctgtg
gaggagaagaagaagattccagacccagacagtgacgacgtctcggaggtggatgcccgg
cacatcattgagaatgccaagcaagacgtagatgatgaatatggtgtgtcccaggccctt
gcccgtggcctacagtcctactatgctgtggcccatgcagtcaccgagagagtggacaag
cagtctgctctgatggtcaatggtgtgctcaaacaataccagatcaagggcctggagtgg
ctggtgtctctgtataacaacaatttgaatggcatcctagctgacgagatgggtctggga
aagaccatccagaccattgcactcatcacgtacctcatggagcacaagcgcatcaacggg
cccttcctcatcattgtgcctctctcgacactgtcaaactgggcgtatgaatttgacaag
tgggccccctctgtggtgaaggtgtcctacaagggctctcctgcagcaagacgagctttt
gtcccccagctccgcagtgggaagttcaacgtcttgctgaccacctacgagtatatcatc
aaagacaaacacatcctggctaagatccgctggaagtacatgatcgtcgacgaaggccac
cgcatgaagaaccaccattgcaagctgacgcaggtcctcaacacgcactatgtggctccc
cggcgcctgctgctgacgggtacgccgctacagaacaagttgccagagctctgggcactg
ctcaacttcctgctgcccaccatctttaagagctgtagcaccttcgagcagtggttcaac
gcacccttcgctatgactggcgagaaggtggacctgaatgaggaagagactatcctgatc
atccgtcgtctgcacaaggtgctgcgacctttcctgctacggaggctcaaaaaggaagta
gaggcccagctgcctgagaaggtggaatacgtcatcaagtgtgacatgtcagccttacag
cgtgtgctctataggcatatgcaggccaagggcgtgttgctgacggatggctctgagaag
gacaagaagggcaaaggtgggaccaagacgctgatgaacaccatcatgcagctacgcaag
atctgcaaccacccatacatgttccagcacattgaggagtccttctctgagcacttgggc
ttcactggtggcatcgtccaaggactggacctgtaccgtgcctcagggaaattcgaactt
cttgatcggattctgcctaagctgcgtgctaccaatcataaagtgctgctcttctgccaa
atgacctccctcatgactatcatggaagactattttgcataccgtggcttcaaatatctc
aggcttgatggaaccacaaaagcggaggaccggggcatgctgctgaaaactttcaatgaa
cctggctctgagtacttcatcttcctgctcagcacccgtgctgggggcctgggcctcaac
ctgcagtcggcagacactgtgatcatatttgacagcgactggaacccccaccaggacctg
caagcacaggaccgtgcccaccgcattggtcagcagaatgaggtgcgcgtgctccgcctc
tgcacggtcaacagcgtggaggaaaagatcctggctgccgctaaatacaagcttaatgtg
gaccagaaggtgatccaggcaggcatgttcgaccagaagtcatcaagccacgagcggcgt
gccttcctgcaggccattctggagcacgaggagcaggacgagagcagacacagcagcacg
ggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggcgtcaaccccgac
ctggaggagccacctctaaaggaggaagatgaggtgcctgacgatgagacagtcaaccag
atgatcgcccggcacgaggaggagtttgaccttttcatgcgcatggacctggaccgccgg
cgtgaagaggcccgcaaccctaagcggaagccacgcctgatggaggaggatgaactccct
tcttggattattaaggatgatgccgaggtagaacggctcacctgtgaggaggaggaagag
aagatgtttgggcgtggctcccgccatcgcaaggaggtggactacagtgattcgctgaca
gagaagcagtggctcaagaccctgaaggccatcgaggaaggcacgctggaggagatcgaa
gaggaggtccggcagaagaaatcctcacggaagcgcaagcgcgacagcgaggccggctcc
tccaccccaaccaccagcacacgtagccgagataaggatgaagagagcaagaagcagaag
aagcgtggccggccacctgctgagaagctgtccccaaacccacccagcctcaccaagaag
atgaagaagattgtggatgctgtcatcaagtacaaggacagtagtagtggacgtcagctc
agtgaggtgttcattcagctgccttcacgcaaggagctgcctgagtactacgagctcatc
cgcaagcctgtggacttcaagaagatcaaggagcgcatccgcaaccacaagtaccgcagc
ctgaatgacctggagaaggacgtgatgctgctgtgccagaatgcacagaccttcaacctt
gagggctccctgatctacgaggattccattgtcctgcagtccgtcttcaccagcgtgcgg
cagaaaatcgagaaagaggatgacagtgagggcgaggagagtgaggaggaggaggagggc
gaggaagaaggctccgagtccgagtcacgctctgtcaaggtgaagatcaagttgggccgc
aaggagaaggctcaggaccgactgaaggggggccggcggcggcccagccgtggatcccgg
gcaaagccagtcgtgagtgatgatgacagtgaagaggaacaagaggaggaccgctcagga
agtggcagcgaggaagactga
DBGET
integrated database retrieval system
