Nannospalax galili (Upper Galilee mountains blind mole rat): 103734800
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Entry
103734800 CDS
T03372
Symbol
Pnldc1
Name
(RefSeq) PARN like, ribonuclease domain containing 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103734800 (Pnldc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103734800 (Pnldc1)
Enzymes [BR:
ngi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103734800 (Pnldc1)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103734800 (Pnldc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
103734800
NCBI-ProteinID:
XP_008832090
LinkDB
All DBs
Position
Un
AA seq
534 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVSGADFVGLDIEFTGLRSNLSQPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSLFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHSILRGNWRVRSSLDKDQIKVVIDEVTRWLDLAKEGDQ
MTLPGIAGFQAFEVQLVLRQALPNIWTVLKDEGVVVKKVSQQHRWYLEHASCDQVSCWKE
QIVLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV
LIDTKNVTKDIWKELRFPRVSNLSEVYEVLSSNLNPTKNSGPVIIHARQCEKYAETKCPH
EAAYDAFLCGSVLLKVAHLLLQRMHGSGSVHEPSFSQYLDVLAPYVNQVNLIRGRVPKIN
FSGPDYPSIRPPVLILTVRRWSGVSEQQVYHEFQNLCKFDVRRFTQSQFLLLTNKFKDAR
SVLKEYRSHPTLQVSLYRYWRHSPNITCLLQVCSIVTTWAMIAFILGRSSPRAQ
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgcggatgagtttgagcagagcctcccgctgctgcaggagctcgtctcg
ggtgcagacttcgtgggtctggacatagagttcaccggtctgcgttcaaacctgtcccag
ccccaacagatcagtctttttgatttgccttctgagtggtacctgaagacccggcagagt
gtacagcagttcacaatctgtcagattggattgtctctgttttccagtattgaaggagag
tcaaacaagtatgtagcccattcctgtaacttcttcctcttccctacaacatttgggatt
ttggattcagaattctctttccaggcttctagtgttcagtttttgaatcagtatggcttc
gactataacaagtttcttaaaaatggaatcccgtatatgaatgaagaacaggagaagaag
attaagcacagcatcctgagagggaactggcgagtccggagctctctggataaagaccag
attaaggtggtgattgatgaggtgacacggtggctggacctagcgaaggaaggtgaccag
atgactctgcctggcatcgctgggttccaagcctttgaggtccaattggtgctgaggcag
gccctccccaacatctggacagtgctgaaagacgagggggtggtggtgaagaaggtgagc
cagcagcatcgctggtacctggagcacgcctcttgtgaccaagtcagctgttggaaggag
cagattgttctctctgccaggggcttttctgtctttttccagatgttagtgaaggcccag
aagcccttggtaggacacaacatgatgatggacttgctgcatctgcatgagaagttcttc
agacctcttccagaaagctatgaccagtttaagcagaacatccacagcctgtttcctgtc
ctcattgataccaagaatgtgacaaaggacatctggaaggaactgcgtttcccacgggtc
tccaacctctcagaagtatatgaagtgctgagcagtaacttgaatcccaccaagaattct
ggaccagtgattattcatgcaaggcagtgtgaaaaatatgctgagaccaagtgcccccac
gaagcagcgtatgatgccttcctctgcgggtcagtccttttgaaagtggcacacttgctc
ctacaaaggatgcacggcagtggctctgtgcatgagccttccttctctcagtacctcgat
gtgctggcgccttatgtgaaccaagtgaatcttattcgaggccgggtccctaaaattaac
ttttctgggccagattaccccagtatccgccctcccgtcctcatcctcactgtcaggagg
tggtctggggtcagtgagcagcaggtttaccatgagttccagaatctctgcaagtttgat
gtcaggcggttcacgcaaagccagttcctgcttctgaccaataagtttaaggatgcccgc
agcgtcctgaaggagtacaggagccacccaaccctgcaggtctccttgtaccggtactgg
agacactccccaaatatcacctgcctgttacaagtctgcagcatagtcaccacctgggcc
atgattgcgttcatcctgggaagatccagcccccgagcacagtga
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