Nannospalax galili (Upper Galilee mountains blind mole rat): 103735814
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Entry
103735814 CDS
T03372
Symbol
Smarce1
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03082
ATP-dependent chromatin remodeling
ngi04714
Thermogenesis
ngi05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103735814 (Smarce1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
103735814 (Smarce1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
103735814 (Smarce1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngi03000
]
103735814 (Smarce1)
03021 Transcription machinery [BR:
ngi03021
]
103735814 (Smarce1)
03036 Chromosome and associated proteins [BR:
ngi03036
]
103735814 (Smarce1)
Transcription factors [BR:
ngi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TOX
103735814 (Smarce1)
Transcription machinery [BR:
ngi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103735814 (Smarce1)
Chromosome and associated proteins [BR:
ngi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103735814 (Smarce1)
PBAF complex
103735814 (Smarce1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
GCN5L1
Sarcoglycan_2
Pepsin-I3
Motif
Other DBs
NCBI-GeneID:
103735814
NCBI-ProteinID:
XP_008833403
UniProt:
A0A8C6R5C6
LinkDB
All DBs
Position
Un
AA seq
411 aa
AA seq
DB search
MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIP
KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYE
AEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPD
DYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK
LEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARKRQ
EEREKEAAEQAERSQGSVAPEEEQAASKAEEKKDEESIPMETEETHLEETTESQQNGEEG
TSTPEDKESGQEGVDSMAEEGTSDSNTGSESNSATVEEPPTDAMPEDEKKE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagaccatcttatgccccacctcccaccccagctcctgcaacacaaatgccc
agcacaccagggtttgtgggatacaatccatacagtcatctcgcctacaacaactacagg
ctgggagggaacccgggcaccaacagccgggtcacggcatcctctggtattacgattcca
aagcccccaaagccaccagataagcctctgatgccctacatgaggtacagcagaaaggtc
tgggaccaagtaaaggcttccaaccctgacctaaagctgtgggagattggcaagattatt
ggtggcatgtggcgagatctcactgatgaagagaaacaggaatatttaaacgaatacgaa
gcagaaaagatagagtacaatgaatctatgaaggcctatcataattcccctgcatatctt
gcatacatcaacgcaaaaagtcgtgccgaagctgcattagaggaagaaagtcgacagaga
cagtctcgcatggagaaaggagaaccctacatgagcattcaacctgccgaggatccagat
gattatgacgatggcttttcaatgaagcatacagccactgcccgtttccagagaaaccac
cgcctcatcagtgaaatcctcagtgagagtgtggtgccagacgtgcgctcagttgtcaca
acagctagaatgcaggtcctcaagcggcaggtccagtctttaatggttcatcagcgaaaa
ctagaagccgaacttcttcaaatagaggaacgacatcaggaaaagaagaggaaattcctg
gaaagcacagactcctttaacaatgaacttaaaaggctatgcggcctgaaggtagaagtc
gatatggaaaaaattgcagctgaaattgcacaggcagaagaacaggcccgcaagaggcag
gaggagcgggagaaggaggcggcagagcaagccgagcgcagtcagggcagcgtcgccccc
gaggaagagcaggccgcaagcaaagccgaggagaagaaggacgaggagagcattcccatg
gagacagaggagacgcaccttgaagaaacaacagagagccaacagaatggtgaagagggc
acgtctacccctgaggacaaggagagtgggcaggagggggtggacagcatggcagaggaa
gggaccagtgatagcaatactggctcggagagcaacagtgctacagtcgaggagcccccc
acagacgccatgccagaagacgagaagaaggagtaa
DBGET
integrated database retrieval system
