Nannospalax galili (Upper Galilee mountains blind mole rat): 103736636
Help
Entry
103736636 CDS
T03372
Symbol
Clp1
Name
(RefSeq) cleavage and polyadenylation factor I subunit 1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103736636 (Clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103736636 (Clp1)
Enzymes [BR:
ngi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
103736636 (Clp1)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103736636 (Clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
ATP_bind_1
TniB
MMR_HSR1
AAA_22
AAA_16
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
103736636
NCBI-ProteinID:
XP_008834374
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MEKMGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTF
DAGAKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRV
MVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEG
FSIQAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGS
GYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERTKDFRRECR
DERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTP
GRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIM
DIRFMDLK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagatgggcgaggaagccaatgatgacaagaagccaacgactaaatttgaacta
gagcgagaaacagaactgcgctttgaggtggaggcatcccagtcagttcagttggagttg
ttggctggcatggcagagatctttggcacagagctgacccgaaacaagaaattcaccttt
gatgctggtgccaaggtggctgtttttacttggcatggctgttccctgcaattgagtggc
cggacggaggtggcttatgtctctaaggatacccctatgttgctttatctcaacactcac
acagccttggagcagatgaggaggcaagcagaaaaggaggaagagagaggcccccgagtg
atggtagtgggtcccaccgatgtgggcaagtccacagtgtgccgactattactcaactat
gcagtgcgattgggccgccgtcctacctatgtggaactggacgtgggccagggctctgtg
tcaatcccgggcactatgggggccctctacattgagaggccagcagatgtagaagaaggt
ttctctatccaggcccctctggtatatcattttggctccaccaccccaggcaccaacatc
aaactttataacaagattacatcacgtttagcagatgtgttcaaccaaaggtgtgaagtg
aacagaagggcatctgtaagtggctgtgtcattaacacctgtggctgggtcaagggctct
ggttaccaggctttggtgcatgcagcttcagcttttgaggtggatgtcgttgtggttctg
gatcaagaaagactgtacaatgaactgaaacgggatctgccgcactttgtacgcactgtg
ttgcttcctaaatcagggggtgtggtggaacgcaccaaggacttccggcgggaatgtagg
gatgagcggatccgggagtacttctatggattccgaggctgtttctatccccatgctttc
aatgtcaagttttcagatgtgaagatctacaaagttggggcacctaccatccctgactcc
tgtttgcctttaggcatgtctcaggaagacaatcagctcaagttagtacctgtcacccct
ggccgagatatggtgcaccatctactgagcgtcagcacggctgaggggacagaggagaac
ctctctgagacaagtgtggctggcttcattgtggtgaccagtgtggacctggaacatcaa
gtgtttactgtcctgtctcccgctccccgcccactgcccaagaacttccttctcatcatg
gatatccggttcatggatctcaagtag
DBGET
integrated database retrieval system
