Nannospalax galili (Upper Galilee mountains blind mole rat): 103738881
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Entry
103738881 CDS
T03372
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA decapping 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103738881 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103738881 (Edc4)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103738881 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
103738881 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_HPS5
WDR55
DUF445
EIF3I
Motif
Other DBs
NCBI-GeneID:
103738881
NCBI-ProteinID:
XP_008837280
UniProt:
A0A8C6QSV6
LinkDB
All DBs
Position
Un
AA seq
1405 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGPSAENQRPSSAYNGDLNGLLVPDPLSSGDGTS
TSKSGIRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEENEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAESSHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFTFGESRPELSSEGLGSAAHGSQSDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PTASLQQITASPSSSSSSSSSSSSSSSSSSSSSLTAVSAVSSSSAMDPSLPRPSEELTLS
PKLQLDASLTINSSSSLQASPRSLLPGLLSGPADKLTPKGPGQVSSAASALSLDLQEVEP
LSLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASAL
HLLSPRPRPGPELGPQLGLDGGPGDGDRHSTPSLLEAALTQEAAAPDSQVWPTAPDITRE
TCSTLTESPRNGLQEKHKSLAFHRPPYHLLQQHDSHDTSAEQSDHDDEVASLASASGGFG
TKIPTPRLPAKDWKTKGSPRTSPKLKRKSKKDDGDLAVGSRLTDHQVAEPPEDWPALIWQ
QQRELVELWHSQEELLQRLCAQLEGLQSTVTGHVERALETRHEQEQRRLERALAEGQQRG
GQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTA
VEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQTAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSSSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPS
AHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQP
VLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAE
PHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcccgcagggggccccagtgcagagaaccagaggccatccagtgcctac
aatggggacctcaatgggctcctggtcccagaccccctcagctcaggtgatggaacctca
acaagcaaatctggtatacggactatgccacccattaacctgcaggaaaagcaggtcatt
tgcctctccggagatgacagctccacctgcatcgggattttggctaaggaggtggaaatt
gtagccagcagtgattctagcatttccagcaaggcacgggggagcaataaagtgaaaatc
cagcctgtcgccaagtatgactgggagcagaaatactattatggcaacctgattgcagtg
tctaactccttcttggcatatgccattcgggctgccaacaatggctcagcaatggtacga
gtgatcagtgttagcacttcagagcggaccctgctcaagggtttcacaggcagtgtggct
gatctggcttttgcacacctcaactctccacagctggcctgcctggatgaggctggcaac
cttttcgtgtggcgcttggctctggttaagggcaaaattcaagaagagattttagtccat
atccggcagccagagggcacacccctgaaccacttccgaaggatcatctggtgtcccttt
atccctgaggaaaatgaagactgctgtgaggaaagcagcccaacagtggccttgctgcat
gaagaccgggctgaggtgtgggacctggatatgctccgttccagccacagtacctggcct
gtggatgtcagccaaatcaagcagggcttcattgtggtaaaaggccatagcacgtgcctc
agtgaaggagccctttctcctgatggaactgtcctggctaccgcaagtcatgatggctat
gtcaagttttggcagatctacattgaaggtcaggatgagccaaggtgtctgcatgaatgg
aagcctcatgatggacggcccctctcctgcctcctgttctgtgacaaccataaaaaacag
gatcctgaggtccctttctggaggttcctcattactggcgctgaccagaatcaggagctg
aagatgtggtgcacagtatcctggacctgcctgcagaccattcgcttctccccagatatc
ttcagctcagtgagtgtgcctcccagcctcaaggtttgcttggacctctcagcagaatat
ctgattctcagtgatgtacagcgaaaggtcctctatgtgatggagctgctgcagaaccaa
gacgaaggccgcgcttgctttagttccatctctgagttcctgctcacccaccctgtcctg
agctttggtatccaggttgtgagccgctgccggcttcggcacactgaggtgctgcctgct
gaggaggagaatgacagtctgggagctgaaagttcccatggagctggtgccatggaatct
gcagctggtgtgctcatcaagctcttttgtgtgcatactaaggctctacaagatgtgcag
atccgcttccagccacagctgaaccctgatgttgtggccccactccccacccacactgcc
cacgaggacttcacatttggagagtctcgacctgaactgagctctgaggggctggggtca
gctgctcatgggtcccagtctgaccttcgacgcatcgtggaactgcctgcacctgcagac
ttcctcagcctgagcagtgagaccaagcctaagttgatgacacctgatgccttcatgaca
cctactgcttccctgcagcagatcactgcatcccctagcagcagcagcagtagtagcagc
agcagcagcagtagcagcagcagcagcagtagcagctctctgacagctgtgtctgctgtg
agcagctcttcggccatggatccctccttgcccaggccatctgaggagctgaccttgagc
cccaagctgcaactggatgccagtctgacgataaacagcagcagcagcctgcaggcaagc
ccacgcagcctcctacctggcctgctttcaggcccagctgacaaattgactcccaagggg
cctgggcaggtatcttctgccgcctctgcactatccttggatctgcaggaagtagagccc
ctgagcctaccgcaagcctcccctagtcgcacccgttctcctgatgtgatctcctcagct
tccactgccctgtcccaggacattcctgagatcgcgtctgaggctctttctcgtggcttt
ggctcctctgctcctgagggtcttgagccagacagtatggcctcagctgcctcagcacta
cacctcctatccccacggccccggccaggtcctgagcttggcccccagcttggcctagat
ggaggccctggggatggagatcggcatagtaccccctccctactagaggcagcattaacc
caagaggctgcagcccctgacagtcaggtctggcctacagcacctgacattactcgtgag
acctgtagtactctgacagagagccccagaaatggcctccaggagaagcacaaaagcttg
gccttccaccgaccaccttatcacctgctacaacaacatgacagtcatgataccagtgct
gagcaaagtgaccatgatgatgaagttgccagccttgcctctgcctcaggaggctttggc
accaaaattcccactccacggctgcctgccaaggattggaagaccaaaggatccccacgg
acctcacccaaactcaagaggaaaagcaagaaggatgatggggatttggctgtgggatcc
cggctcactgaccatcaggtggcagagccccctgaggactggccagcactcatttggcag
cagcaaagagaattggtagagctgtggcacagccaagaagagctgctacagcgtctgtgt
gcccagcttgaaggtctgcagagcactgtcacaggccatgtagagcgtgccttggagacc
cggcatgagcaagagcaacggcggctggagcgggcactggctgaggggcagcagcggggt
gggcagctgcaggagcagctgacacagcagctgtcccaggcactgtcgtcagctgtggct
gggcggctggagcgcagtataagggatgaaattaagaagacagttcctccatgtgtctcc
aggagtctagagcctgtggcaggccagctgagcaactcagtagctaccaagctcacagct
gtggaaggcagcatgaaagagaatatctctaagcttctcaagtccaagaacttgacagat
gccattgcccgagcagctgcagacacattacagggaccaatgcagactgcctaccgtgaa
gccttccagagtgtggtgctgccagcctttgagaagagttgccaggccatgttccagcag
atcaatgatagctttcggctgggaacgcaggaatacttgcagcagctagagagtcacatg
aagagccggaaggcacgtgaacaggaggccagggagccagtgctagcccagctgcggggc
ctggtcagcacactgcagagtgctactgaacagatggcagccactgtgtctagcagcgtt
cgagctgaggtgcaacaccagctgcatgtggctgtgggcagcttgcaggagtcaatttta
gcacaagtacaacgcattgttaagggtgaagtgagtgtggcactcaaggagcaacaagcc
acggtcacctccagcataatgcaggccatgcgctcagctgctggcacacctgtcccctct
gcccaccttgactgccaggcccagcaagcccatatcctacagttactgcagcagggccac
ctcaatcaggccttccagcaggcactgacagctgctgatctcaacctggtgctgtatgtg
tgtgaaactgtggacccagcccaggtttttgggcagccgccctgtccactttcccagcct
gtactcctttccctcatccagcagctggcatctgaccttggaactagaagtgacctcaaa
ctcagctacttggaagaagctgtgatgcacctggaccacagtgaccccatcactcgagac
cacatgggctctgtcatggcccaggtgcgccagaagctcttccaattcttgcaggctgag
ccacacaactcacttggtaaagcagcccggcggctcagcctaatgctacatggccttgtg
acccccagcctcccttag
DBGET
integrated database retrieval system
