Nannospalax galili (Upper Galilee mountains blind mole rat): 103739395
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Entry
103739395 CDS
T03372
Symbol
Ddx1
Name
(RefSeq) DEAD-box helicase 1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngi03041
]
103739395 (Ddx1)
03016 Transfer RNA biogenesis [BR:
ngi03016
]
103739395 (Ddx1)
Enzymes [BR:
ngi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103739395 (Ddx1)
Spliceosome [BR:
ngi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103739395 (Ddx1)
Transfer RNA biogenesis [BR:
ngi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103739395 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
103739395
NCBI-ProteinID:
XP_008837994
LinkDB
All DBs
Position
Un
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVTQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggggttatgcctgagattgcacaagctgtggaagagatg
gattggcttctccccaccgatatccaggctgaatctatcccattgatcctaggaggaggt
gatgtacttatggctgcagaaacaggaagtggaaaaactggtgctttcagtattccagtt
atccagatagtttatgaaactctgaaagaccaacaggaaggaaaaaaagggaaaaccaca
attaaaactggtgcttcagtgctcaacaaatggcagatgaacccatatgatagagggtct
gcttttgcaattgggtcagatggtctgtgttgtcagagcagagaagtaaaggaatggcat
gggtgcagagctactaaaggattactgaaagggaagcactactatgaggtatcctgccat
gaccaagggttgtgcagagttggctggtctaccatgcaggcctccttagacctaggtact
gacaaatttggatttggttttggtggaacaggaaagaagtctcacaataaacagtttgat
aattatggagaggaattcactatgcatgataccattggatgctatcttgatattgataaa
gggcatgtgaaattctctaagaatggaaaagatcttggtctggcatttgaaataccagca
catataaaaaaccaagccctctttcctgcttgtgttttgaagaatgctgaattaaaattt
aactttggtgaagaagaattcaagtttccaccaaaagatggttttgttgctctttcaaag
gcaccagatagttatgtcgtcaaatcgcagcacacaggtaatgcacaggtgacacaaaca
aagtttctcccaaatgctccaaaagctctcattgtagaaccctcccgggagttagctgaa
cagactttgaataatgtgaagcagtttaagaagtatattgataatcctaaattaagggag
cttctgataattggaggtgttgcagctcgggatcagctctctgttttggataatggggtt
gatattgttgtaggcactccaggaagactagatgatttggtgtcaactggaaagctcaac
ttgtctcaagtgagattcctagtcctagatgaagcggatgggcttctttctcaaggttat
tctgattttataaacaggatgcatagtcagatccctcagattacctctgatggaaaaaga
cttcaggtgattgtttgctctgctactttgcattcttttgatgtaaagaaactgtcagag
aagataatgcattttcccacatgggttgatttaaaaggagaagattctgttccagatact
gtgcaccatgtcgttgtccctgtgaatcccaaaactgacaaactctgggaaagactgggg
aagaaccacattagaactgatgatgtacatgcaaaagataacacaagaccaggtgctaat
agtccagagatgtggtctgaagctattaaaatcctgaagggggaatatgctgttcgggct
atcaaggaacacaagatggatcaagcaattatcttctgtagaaccaaaattgactgtgat
aatttggagcagtattttatgcaacaaggaggaggacctgataaaaaaggacaccagttc
tcatgtgtttgtcttcatggtgacagaaagcctcatgaaagaaagcagaacttggaaaga
tttaagaaaggagatgtgagattcttgatttgcacagatgtagctgccagaggaattgat
atccacggtgttccttatgttataaatgtcaccctgcctgatgaaaagcaaaactatgtg
cacaggattggcagagtggggcgggcggaaaggatgggtctggccatttccctggtggca
acagaaaaagaaaaggtttggtaccatgtatgcagtaaccgtggaaaagggtgctataac
accaggctcaaggaggatggtggctgtaccatttggtacaatgaaatgcagcttctctct
gagatagaagaacacttgaactgtactatttcccaggttgagccagatataaaggttcca
gtggacgaatttgatgggaaagttacttatggtcaaaaaagagctgctggtggtggaagc
tataaaggccatgtggatattttggcacctaccgttcaagagttggccgcccttgaaaag
gaagcacagacatctttcctgcatcttggctaccttcccaaccagctgttcagaaccttc
tga
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