Nannospalax galili (Upper Galilee mountains blind mole rat): 103739955
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Entry
103739955 CDS
T03372
Symbol
Col18a1
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103739955 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngi04147
]
103739955 (Col18a1)
00535 Proteoglycans [BR:
ngi00535
]
103739955 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
ngi00536
]
103739955 (Col18a1)
Exosome [BR:
ngi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103739955 (Col18a1)
Proteoglycans [BR:
ngi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103739955 (Col18a1)
Glycosaminoglycan binding proteins [BR:
ngi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103739955 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
103739955
NCBI-ProteinID:
XP_008838659
LinkDB
All DBs
Position
Un
AA seq
1793 aa
AA seq
DB search
MNGGGGDQASPTSRTTGATPSSEACTALMAPDPSRRLCLLLLFTCCLVPVGANLLTLDWL
WSTKITDPLETRDSSPPVQTTEDPTTHVVSQDGLMEQQTTPVSPKPPLEDQEVSQNGTPA
TSTIPEPRTVPAASAASPDTKEENIAGVGAKILNVAQGIRSFVQLWDDDATTENSIGVEA
SASSTPTALLTSTGLSNAPQETEVTLLPSTGAPSSSDVQTTEAGTLAVSTQPSPSLGRLQ
APLRGPSMPPAPSGRAFLSSVPSRAPLWGSQKPPRHPQHLDREAMAARPSQQHRRPDVHS
DIHRHMPLLLPLVAGPLVTGSLDVHDLLSPSSSDSLAQLSQMAALPGFPGAWVSHVTTSA
RPGLSNDSALLGTGPLTSASRCLPLPPALAVCSRLGITHSWLPNHLHNENSKEVEATVWA
WRDLLQTHCHPFLAWFFCLLLAPSCGPGPPPALPPCRQFCVVLEDACWSHLDRGRLPVTC
ASLPSQEDGYCVFVGPAAENGAEEVRLLQLLGDPLPQHISQIDDPDVGPAYVFGRDSGSG
QVAQHHFPRLFFRDFSLLFHIQPATGDAGVLFAITDTAQEVVSLGVKLSGVYSGHQNVSL
LYTEHGASQTQTGVSFRLPAFVGQWTHFALSVDGSSVALYVDCEEFQRVPFPRSSQGLEL
ERGAGLFVGQAGAADPDKFQGKISELRVRRNPHVSPVHCLDEEEEDEDRASGDFGSGLEE
SSEPWGEEGTSLPPRLPQPPPVTSPPLAGGSTTEDSRTEEIEEETIVDSVGAETLPGTDS
SGAWDESVRSPGGGLMKGGQKGQKGEPGAPGLPGPIGPQGPEGPVVQSPNVQPVPGAQGL
PGPQGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDIGPKGEKGDPGVGPRGPP
GPQGPPGPPGPSFRQDKLTFIDMEGSGFSGDLESLRGPRGFPGPPGPPGVPGLPGEPGRF
GVNSSHAPGPAGLPGVPGRDGPPGFPGPPGPPGPPGKEGPPGVAGQKGSLGDVGTPGPKG
SKGDPGLVGPPGKNGLVGPPGPAGPQGPPGPPGPPGPGYAAGFDDMEGSGAPFWSTARGS
DGLQGPPGLPGLKGDPGVTGLPGIKGETGADGARGFPGLPGREGAAGPPGPKGEKGSQGE
KGNPGKDGVGHPGLPGPPGPPGPVSYVSAEDRTVASVPGPEGRPGYAGFPGPAGPKGDLG
SKGEQGFPGPKGEKGEPGAIFGPDGRALDPTQKGAKGEPGFRGPPGPYGRPGHKGEIGFP
GRPGRPGINGLKGEKGEPGDASLGFSMRGMPGPPGPPGPPGPPGMPIYDSNAFVESGRPG
PPGQQGVQGPSGPKGDKGEVGPPGPPGQFPFDLLRLGAEMKGDKGDQGDTGQKGERGEPG
AGGGGFFGSSIPGPPGPPGPPGYPGIPGQKGESIHGQPGPPGPQGPPGIGYEGRQGPPGP
PGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKVREVPE
GWLIFVAEREELYVRVRNGFRKVLLEARTALPRGTGNEVAALPPPLVQLHESSSYTRREH
SYSTARPWRADDILASPPRLPDPQPYPGVPHHHGSYTHLRPVRPTAAPAHTHQDFQPVLH
LVALNSPLSGGMRGIRGADFQCFQQARAVGLTGTFRAFLSSRLQDLYSIVRRADRGAVPI
VNLKDEVLFPSWEALFSGSQSQLQPGSRILSFDGRDVLRHPDWPQKSVWHGSDPSGRRLT
ESYCETWRTEATGATGQASSLLSGRLLEQKAASCHNTYIVLCIENSFMTSFSK
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggggaggtggggaccaggcaagccccacctccaggaccacaggagccaccccc
agctccgaggcttgcacagccctgatggctcccgaccccagcaggcgcctctgcttgctg
ctgctgttcacctgctgccttgtgcctgtgggggccaacctgctgaccctggactggctg
tggtccaccaagatcactgatcccttggaaacacgggactctagcccacccgtgcagact
acagaggaccccacaacgcacgtggtctcccaggatggcctcatggaacaacagacaact
cctgtcagccctaagccgcccttggaggatcaggaagttagccagaatgggacacctgca
acctctaccatccccgaaccccgcacagtccctgctgcctctgctgcgagcccagacacg
aaggaggagaacatcgctggagttggagccaagatcctgaatgtggcacagggcattcgg
agcttcgtccagctgtgggatgatgatgccactactgagaattctattggggtggaggcc
tcagcctcctccacccctacagccctcctcacctctactgggctctccaatgctccccag
gagaccgaggtgactctcttgccgagcactggagctccgagttcctcagatgtccaaaca
actgaggctggcaccctggcagtttccacccagccgtctccctccctgggcaggctccag
gcaccactgaggggaccctcaatgccaccagcaccctcaggtagagcttttctctcttct
gtgcccagcagggctcctctctgggggagccagaagccccccagacacccccagcacctg
gacagggaagccatggcagccaggcccagccagcagcaccgacgccctgatgtccactct
gacatccacaggcacatgcctcttctgcttcccctggtggcgggtcccctggtgacgggt
tccctggatgtacacgatttactttctccctcttcctctgactccttggcccaactctct
caaatggcagctttacctgggttccctggtgcttgggtttcccatgtgactacctctgca
aggcctgggctttctaatgactctgcactgctggggactggccccctgacctccgccagc
cgctgcctgcccctgccacctgccctggccgtctgtagccgcctggggatcactcactcc
tggctacccaatcatctgcataatgagaacagcaaggaggtggaggccacagtgtgggcg
tggagggacctcctgcagacgcactgccaccccttccttgcctggttcttctgcctgctg
ctggccccctcatgtggcccaggcccaccacctgccctgccaccctgccgccagttctgc
gtggtgctggaggatgcctgctggagccacctggaccgaggccggctgcctgtcacctgt
gcctcgctcccttcccaagaggatgggtactgtgtattcgttgggccagctgcagagaat
ggtgctgaggaggtccgactgctgcagctcctcggggaccctctgccccagcatatctcg
cagatcgatgaccctgatgttgggccggcctacgtctttggacgggactccggcagtggc
caggtggcccagcaccacttccctagactcttcttccgtgacttctcgctgctgttccac
attcagccggccacgggggatgcaggggtgctgtttgccattacagatacagcacaggaa
gtggtctccctgggggtgaagctctcaggggtgtacagtgggcaccagaacgtctcattg
ctctatacagaacatggcgccagccagacccagacaggcgtcagcttccgcctgcctgcg
ttcgtcggccagtggacacattttgcactcagtgtggatggcagctcagtggctctgtat
gtggactgtgaggagttccagagagtgccatttcctcggtcctcacagggcctggagctg
gagcgtggcgctggcctctttgtaggccaggctggagcagcagaccctgacaagttccag
gggaagatctccgaactgagagtacgcagaaacccccatgtgagccctgtgcactgcctg
gatgaggaggaggaggatgaagacagggcgtctggggactttggaagcggcctggaagag
agcagtgagccatggggggaggagggtacatccctaccaccgaggctcccccagcctccc
cctgtcacttctcctcccttggctggaggcagcaccactgaggattctagaacagaagaa
atcgaggaagaaaccatagtggattcagtaggagctgagacccttcctggcacagattca
agtggtgcttgggatgagagtgtccggagccctggaggcggcctgatgaagggcggtcag
aaggggcaaaagggggaaccaggtgctccgggcctacctggcccaattggtccccagggt
cccgaaggcccagtggtacagagtcccaatgtacaacctgtccctggggcacagggactt
ccaggaccccaggggccacctgggaaggatggtgctccaggaagggatggtgagccaggt
gaccccggtgaagacgggaaaccaggtgacactggacctcagggctttccagggacccca
ggagacataggccctaagggtgagaagggagatcctggtgttgggccaagaggacctcca
ggaccccaaggacctccggggccaccgggtccctcctttagacaggacaaactaactttc
attgacatggagggatctggcttcagcggagacctggagagccttaggggccctcgaggt
ttccctggccccccaggacctcctggagtcccaggacttcccggtgagccaggacgtttt
ggagtcaacagttcccatgctccaggacctgcaggccttcctggtgtgcctgggcgggat
gggcctcctggctttccaggacccccgggtcccccaggtcctccaggaaaagagggtcca
ccaggagtggcaggccagaaaggcagccttggtgatgtgggcaccccaggacccaaggga
agcaagggagaccctggccttgttggcccacctggaaagaatggtttggtgggacctcct
gggcccgccggacctcaaggacccccgggacctcccgggccaccaggaccaggatatgct
gctggattcgacgacatggaaggctctggagcacccttctggtcaactgcccgaggttct
gatgggctccagggacctccaggcctgccaggactcaagggggatcctggagtgacggga
ctacctggaatcaagggagaaactggagcagatggagcccgaggctttcccggcctgcct
ggcagagagggtgcagctgggcccccagggccaaaaggagagaaagggagccagggagaa
aagggaaacccagggaaggatggcgtggggcatccaggcctccctggccctccaggacct
ccaggacctgtgagctacgtgtcagctgaggatagaacagtagcaagtgtgccaggaccc
gagggcaggccggggtacgcaggctttcccggacccgctgggccgaagggtgacctgggt
tccaaaggcgagcagggctttccaggacccaagggcgagaagggagagccaggtgctatc
tttggccctgatggcagagccctggaccccacccagaaaggagccaagggagaaccaggc
tttcgaggacccccgggtccttatgggcggcctggacacaagggtgagatcggcttccct
ggacggccgggtcgccccggtataaacggattgaagggagagaaaggggagcctggagat
gccagcctcgggttcagcatgaggggaatgcctggccccccaggccctccaggcccccca
ggccctccaggaatgcccatctatgacagcaatgcatttgtggagtctggccgacctggg
cctccaggacagcaaggtgtgcagggaccttcaggaccaaagggtgacaaaggagaggtg
ggcccacctgggccaccagggcaatttccctttgacctcctccgcctgggagcagaaatg
aagggggacaaaggagaccaaggggacaccggacagaaaggcgagagaggcgaacctggg
gctggcggtggtggcttcttcggctcgagtataccagggccgcctggacctcctggccca
cctggctaccctgggattccgggtcaaaaaggagagagtatccatggccagcccggccca
cctggacctcagggacctcccggcattggctatgaggggcgccagggccccccaggacct
ccaggccccccgggacccccctcattccctggccctcataggcaaactgtcagtgttcct
ggtcctccgggcccaccaggccccccaggtccccctggagccatgggtgcttctgcaggg
caggtgagaatctgggccacatatcagaccatgctggacaaggtgcgtgaggtgccggag
ggctggctcatctttgtggctgagagggaagagctctatgtacgagtccgaaatggcttc
cgaaaagtactgctggaggcccggacggcgctcccacgtgggacgggcaatgaagtggcc
gccctgccgcccccactggtgcagcttcatgagagcagctcatatacccggcgggagcac
tcctactccacagcacggccttggcgggcagacgacatcctggccagtcccccacgcctg
ccagacccacagccttaccctggagttccacatcaccatggctcctatacacacctgagg
ccagtccgccccacagccgcacctgcccacacccaccaagacttccagccagtcctccat
ctggtggcactgaacagcccactgtcaggtggcatgcgtggcatccgtggggccgacttc
cagtgcttccagcaggcccgggctgtggggctgaccggcaccttccgtgccttcctatcc
tcaaggctgcaggacctctacagcattgtgcgccgtgctgaccgtggggccgtgcccatc
gtcaacctcaaggacgaagtgttatttcccagttgggaggccctgttctctggctcccag
agtcagctgcagccggggtcccgcatcctctctttcgacggcagagatgttctgagacac
cccgactggcctcagaagagtgtgtggcatggctcagaccccagcggtcgcaggctgact
gagagttactgtgagacatggcggacagaggctacaggggccacaggtcaggcctcctca
ttgctgtctggcaggctgctagaacagaaagctgcgagctgccacaacacgtacatcgtc
ctgtgcattgagaacagcttcatgacgtccttctccaagtag
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integrated database retrieval system
