Nannospalax galili (Upper Galilee mountains blind mole rat): 103740080
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Entry
103740080 CDS
T03372
Symbol
Dhx36
Name
(RefSeq) DEAH-box helicase 36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103740080 (Dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103740080 (Dhx36)
03012 Translation factors [BR:
ngi03012
]
103740080 (Dhx36)
Enzymes [BR:
ngi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103740080 (Dhx36)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103740080 (Dhx36)
Translation factors [BR:
ngi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103740080 (Dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
AAA_22
AAA_19
nSTAND3
PhoH
AAA_14
ATPase
NPHP3_N
ResIII
DUF6782
AAA_34
Motif
Other DBs
NCBI-GeneID:
103740080
NCBI-ProteinID:
XP_008838853
LinkDB
All DBs
Position
Un
AA seq
929 aa
AA seq
DB search
MDERREEQIVQLLNSVQAKNDKDSEAQISWFAPEDHGYGTEVSSEKKINSDKKLDNQEKK
SVNQEKKTFRVTDKLYVDRDSEYLLQENEPDVSLDQQLLEDLQKKKTDPRYLEMQRFREK
LPSYGMQKELVNLINNHQVAVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRR
ISAISVAERVAAERAESCGNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLS
SVSHIVLDEIHERNLQSDVLMTVIKDLLNFRSDLKVILMSATLNAEKFSEYFGNCPMIHI
PGFTFPVEEYLLEDIIEKIRYVPEQKEHRSQFKRGFMQGHVNRQEKEEKEAIYKERWPDY
TKELRRRYSANTVDVLEMMDDDKVDLNLIAALIRYIVLEEEDGAILVFLPGWDNISTLHD
LLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYV
IDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDY
QLPEILRTPLEELCLQIKILRLGAIAYFLSRLMDPPSDEAVLLAIKHLMALNALDKQEEL
TPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRK
ELAKETRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLL
GAGFVSSRSPKDPKSNINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVHTKSDGL
VAIHPKSVNVEQTDFHHNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDNDQE
TIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIERPHPVDWKDTKSRDCAVLSAILDL
IRTQEKAAPRDLPPRVQGAYYSRRLPVSV
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagacgagaagagcagattgtccagctgttgaattcggtccaagctaagaac
gataaagattccgaagcacagatatcctggtttgctcctgaggatcatgggtatggtact
gaagtttcctctgagaaaaaaataaattcagataagaaacttgacaaccaagaaaagaaa
tcagtgaaccaagaaaaaaagacatttagagtcacagacaaattatatgttgaccgagat
tctgagtatctgttgcaagaaaatgaaccagatgtgagcttagaccaacaattattggaa
gatttacaaaagaaaaaaactgaccctcggtatctagagatgcagcgtttcagagaaaag
ctgccttcatatggaatgcaaaaggaattggtaaatttaatcaataaccatcaggtagca
gtaataagtggtgaaactggttgtggcaaaaccactcaggttactcagttcattttggat
aactacattgaaagaggaaaaggatctgcatgcaggatagtgtgcactcagccaagaaga
atcagtgccatctcagttgcagaaagagtggcagcagaaagggccgaatcctgtggcaat
ggtaatagtactggataccaaattcgtctccagagtcggttgccaaggaaacagggttct
atcttatactgtacaacaggaatcatccttcagtggctccagtcagactcgcgtttgtcc
agtgttagtcatattgtacttgatgaaattcatgaaaggaatctacagtcagatgtttta
atgactgttattaaagatcttctcaattttcgatctgatctgaaagtaatattgatgagt
gcaacattgaatgctgagaaattttcagaatattttggtaactgtccaatgatacatata
cctggttttacttttccggttgaggaatatcttttggaagatataattgaaaaaataaga
tacgttccagagcaaaaagagcatagatcccagtttaagaggggtttcatgcaagggcat
gtaaacagacaagaaaaagaagaaaaggaagccatctataaagaacgctggccggattac
acgaaggaactgcgcagaagatattctgcaaataccgtggatgttttggaaatgatggat
gatgataaagttgatctgaatttgattgctgcccttattcggtacattgttttggaagaa
gaggatggtgcaatactggtctttctaccaggctgggacaatatcagcactttacatgat
ctcttgatgtcacaagtgatgtttaagtcagataagtttcttattatacctttacattca
ctgatgcctacagtaaaccagacacaggtatttaaaaaaactcctcctggtgttcggaaa
atagtaattgctaccaacattgcagaaactagcattaccatagatgacgtggtttatgtg
atagatggaggaaaaattaaagagacacactttgacacgcagaacaacatcagtacgatg
tctgctgaatgggttagtaaagctaatgccaaacagaggaaaggtagagctggaagagtt
caacccggtcattgctatcatctgtataatggccttagagcaagtcttctagatgactat
caactaccagaaattttgagaacccctctggaagaactttgtttgcaaataaagatttta
aggctaggtgcaattgcctactttctgagtaggttaatggatccaccatcagatgaagca
gtattgctcgccataaaacacttgatggcactgaatgcgttggataagcaagaagaatta
acaccccttggtgtccacttagcccgactgcctgtcgagccacatattggaaaaatgatt
ctttttggagctttgttctgttgcttggacccagtcctcaccattgctgctagtctcagc
tttaaagaccccttcgtcattccgctgggaaaagaaaagattgcagatgcaagaagaaag
gaattggcaaaggaaaccagaagtgaccacctgacagttgtaaatgcatttgagggttgg
gaggaagctagacgtcgtggtttcagatacgaaaaagactattgctgggaatattttctg
tcctctaacacactgcagatgctgcacaatatgaaggggcagtttgctgagcatcttctt
ggagctggatttgtaagcagtagaagtcctaaagatccaaagtcaaatatcaattcagat
aatgagaagataattaaagctgtcatctgtgctggtttatatcccaaagttgctaaaatc
cgactaaatttgggtaaaaaaagaaaaatggtgaaagtgcacacgaagtccgatggtctg
gttgctattcatcctaagtcagtcaatgtggagcagacggatttccatcacaactggctc
atctatcacctgaagatgagaacaagcagtatatacttgtatgactgtacagaagtttcc
ccatactgtcttttgttctttgggggtgatatttccatccagaaggataatgatcaggaa
actattgctgtagatgaatggattgtgtttcagtctccagcaagaattgcccatcttgtt
aaggagttaagaaaggaactggatatccttctgcaggagaagattgaacgccctcaccct
gtagactggaaggacactaagtccagagactgtgcagtgctgtcggctattctagacttg
atcagaacacaggaaaaggcagctccgagggacttgccaccccgagtacagggtgcgtat
tacagccgacggcttcctgtgtcggtctaa
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