Nannospalax galili (Upper Galilee mountains blind mole rat): 103740168
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Entry
103740168 CDS
T03372
Symbol
Prpf19
Name
(RefSeq) pre-mRNA processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03040
Spliceosome
ngi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103740168 (Prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103740168 (Prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngi03041
]
103740168 (Prpf19)
04121 Ubiquitin system [BR:
ngi04121
]
103740168 (Prpf19)
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103740168 (Prpf19)
Enzymes [BR:
ngi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103740168 (Prpf19)
Spliceosome [BR:
ngi03041
]
Complex B
Other components
Prp19 complex
103740168 (Prpf19)
Complex C
Prp19-CDC5 complex
103740168 (Prpf19)
Ubiquitin system [BR:
ngi04121
]
Ubiquitin ligases (E3)
U-box type E3
103740168 (Prpf19)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
103740168 (Prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT122_1st
U-box
Beta-prop_Vps41
Beta-prop_RIG_2nd
PEP5_VPS11_N
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_Nup120_160
PROPPIN
eIF2A
Cytochrom_D1
RMC1_N
Beta-prop_DCAF12
zf-Nse
Beta-prop_WDR35_TULP_N
Beta-prop_LRRK2
DUF1830
ATG16
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
103740168
NCBI-ProteinID:
XP_008838944
UniProt:
A0A8C6QXY7
LinkDB
All DBs
Position
Un
AA seq
504 aa
AA seq
DB search
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPTTSCVQ
VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP
DGLIFGTGTLDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEVLHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgatctgctcgatctccaatgaggtgccagagcacccctgcgtgtccccggtc
tctaatcatgtatatgagaggcgactcattgagaagtacattgcagagaacggcacagac
cctgtcaacaaccagcctctgtcagaggagcagctcattgacatcaaagttgctcaccca
attcggcccaagcctccctctgccaccagcatcccagccattctgaaagccttgcaggat
gagtgggatgccgtcatgctgcacagctttactctgcgccagcagctgcagacaacccgc
caggagctgtcccatgctctgtaccagcacgatgccgcctgccgtgtcattgcccgtctc
accaaggaagttactgctgctcgagaagccctggctaccctgaaaccacaggctggtctc
attgtgcctcaggctgtgccgagctctcagccgagcgttgtgggggcaggagagcccatg
gatttgggtgagctggtgggaatgacccctgagatcattcagaagcttcaagacaaggcc
actgtgctaaccacagagcgtaagaagagaggaaagactgtgcctgaggagctggtgaag
ccagaagagctgagcaaataccgacaggtggcatcccatgtgggcctgcatagtgccagc
attcccgggatccttgccctggacctctgtccctctgacactaacaagattcttactggt
ggggcagataaaaatgttgttgtgtttgataagagttctgagcaaatcctggccaccctc
aagggccataccaagaaggtcaccagtgtggtgtttcacccttcacaggaactggtgttt
tctgcctctccagatgccactatcaggatatggtcagtgccgaccacctcttgtgtacaa
gtcgttcgtgcccatgagagtgctgtgacaggcctcagcctccatgctactggagactat
ctcctgagctcctctgatgaccagtactgggccttctctgacatccagacagggcgtgtg
ctcaccaaggtgacagatgagacctccggctgctctctcacctgtgcccagttccaccct
gatggactcatttttggaacaggaactctggattcccagatcaagatctgggacttgaag
gagcgcaccaacgtggccaacttccctggccactctggtcccatcaccagcatcgctttc
tccgagaatgggtactacttggccacagcagctgatgactcctctgtcaagctctgggac
ttgcgcaagctgaagaacttcaagacattgcagctagacaacaactttgaggtgaagtca
ctgatctttgatcagagcggaacttatctggcccttgggggcacagacgtccagatctac
atctgcaagcagtggacggaggttcttcacttcacagaacatagtggcctgaccactgga
gtggcctttgggcaccatgccaagttcatcgcttcaaccggcatggacaggagcctcaag
ttctacagcctgtag
DBGET
integrated database retrieval system
