Nannospalax galili (Upper Galilee mountains blind mole rat): 103741754
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Entry
103741754 CDS
T03372
Symbol
Brip1
Name
(RefSeq) BRCA1 interacting protein C-terminal helicase 1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03440
Homologous recombination
ngi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103741754 (Brip1)
03460 Fanconi anemia pathway
103741754 (Brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103741754 (Brip1)
Enzymes [BR:
ngi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103741754 (Brip1)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
103741754 (Brip1)
FA (Fanconi anemia) pathway
Downstream FA components
103741754 (Brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
HBB
ARCH_RTEL1
DUF1866
Motif
Other DBs
NCBI-GeneID:
103741754
NCBI-ProteinID:
XP_008840875
LinkDB
All DBs
Position
Un
AA seq
1220 aa
AA seq
DB search
MSSVSSEYTIGGVKINFPCKAYPAQLAMMNSIVRGLNSRQHCLLESPTGSGKSLALLCST
LAWQQSLSGKSVDEGVNKTAEMTSSCSCVCHSKNFTFSDAKLGTSPHFSSPSKPSPERNG
TSSTFQDSPEKNTLAAKLSAKKQASTHRNEDDDFQVEKKRIRPLETTQQMRKRHCFGKDV
HHLDAGVASGRMAKPDSPTGKTNFSPQNPPGPCSWCCCSTKQGNGQESSNTIKKDHAGQS
KRPKIYFGTRTHKQIAQITRELRKTMYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMEL
LDMKHGKSCYFYHGVYKIGNQQTLQNLQGMCKAWDIEELISLGRKLKACPYYTARELMEG
ADIIFCPYNYLLDAQIRESMDIKLKEQVVILDEAHNIEECARESASYSVTEVQLRFARDE
LDSLVNSNVRKKNHEPLRDMCHNLIKWLETNSEHLVERGYESSCKIWNGNEMLLNLYKMG
ITAATFPILQRHFSTILQKEEKVSSIHGKEEAIEVPIISASTQIMLKGLFMVLDYLFREN
SRFADDYKVAIQQTYSWTNQIAISDKNGVLALPKNKKRVRQKIGVHVLSFWCLNPAVAFS
DINDQVRTIVLTSGTLSPLKSFSSELGVTFTIQLEANHVINKSQVWVGTIGSGPKGRNLC
ATFQHTETFEFQDEVGMLLLSVCQTVSRGILCFLPSYKLLEKLRERWVFTGLWHSLELVK
TVIVEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVIT
VGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGA
LILVDDRFNNNPNRYISGLSKWVRQQIQHHSSFASALESLTEFSKEHQKVTDLSKKDRKC
IKDSESTLEMACLEENTLTSLPEAASPLARGNPREEEAKMCVQQPQYPKTNTKNLSVLSH
ITSRRDKNHPVLLEESAQAVKTEKKVISRSLSPTFGEQIDQVSWPVFDSLRQHFTGKVHT
STPVLESSESCASPTFKTKTVESKTVLPLTGKCESSNIIRDTSRGPCPQSETTVSAVNID
VTPTKKDHSTQLCYEKALHPDSELSPGSEEVKHSSSNKALDTEAEDDSIYFTPELFDPID
EESSELVETDISSDDSDCFXAEDLFKTGTRKGADSSXEMKAEDCTDTKLNGVTPSKEKID
INDNMTTCISELELGKTEYI
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagtatcatctgaatacacaattggtggggtgaagattaacttcccttgtaaa
gcttatccagcacaacttgctatgatgaattctattgttagaggactaaacagtaggcag
cattgtttgttggagagtcccacaggaagtggaaaaagcttagctttactttgttctact
ttagcatggcagcagtctcttagtgggaagtcggtggatgaaggtgtgaataaaacagct
gagatgacttcatcttgttcttgtgtatgccactcaaagaattttacattcagtgacgca
aaactaggaacttcgcctcattttagtagtccaagcaaaccatctcctgaaagaaatggc
acttcatcaacctttcaagactcccctgaaaaaaatactctggctgcaaagttatctgcc
aagaaacaagcatccactcacagaaatgaagatgatgattttcaagtagagaagaaaaga
attcgacccttagaaactacacagcagatgagaaaacgtcattgttttggaaaggatgtc
caccatttagatgcaggagtagcttcaggaaggatggcaaaacctgactctcctacagga
aagacaaacttctctccacaaaatccccctggcccctgttcctggtgctgttgttctact
aaacaaggaaatggacaagagtcttcaaatactattaagaaggatcatgcgggacaatcc
aagagacccaaaatatattttgggacacgcacacacaagcagattgctcagattactaga
gagctccggaagaccatgtactcaggggtcccgatgactattctttccagcagggatcat
acttgtgttcatcctgaagtagttggtaacttcaacagaaatgaaaagtgcatggaattg
ctggatatgaaacatggaaaatcctgctatttttatcatggtgtttataaaattggtaat
caacaaacactacagaaccttcaaggaatgtgcaaagcctgggatattgaagaacttatc
agcctaggaagaaagctgaaggcgtgcccctattacactgctcgagaactcatggaaggt
gcggacataatattttgtccctacaactaccttctagatgcacaaataagagaaagtatg
gatataaagctgaaagaacaggttgtcattttagatgaagctcataacattgaagaatgt
gctcgggaatcagcaagttacagtgtaacagaagttcagcttcggtttgctcgggatgaa
ctagatagtttggtcaacagtaatgtaaggaagaaaaaccatgaacccctacgagatatg
tgccataacctcattaagtggttagaaacaaactctgaacatctggtagaaaggggctat
gaatcatcttgtaaaatatggaatggaaatgaaatgctgttaaatttatacaaaatgggc
atcactgctgctacttttcccattttacagagacatttttctactatccttcaaaaagaa
gaaaaagtctcatcaattcatggtaaagaggaggcaatagaagtccctattattagtgct
tcaactcaaataatgctcaaaggactctttatggtgcttgactatctttttagggaaaat
agcagattcgcagatgattataaagttgctatacaacagacttactcctggacaaatcag
attgctatttcagataaaaatggggtcttggctttaccaaaaaataagaaacgtgtacga
caaaaaattggagttcatgtgctaagcttttggtgcttaaatccagccgtggccttttca
gatattaatgaccaagtacggacaattgttttgacatcgggaacattgtcacctctgaaa
tctttttcatcagaacttggtgttacatttactatccaactggaggccaaccatgtcatc
aataaatcacaggtttgggttggtactattggttcaggcccaaagggtcggaatctctgt
gctaccttccagcatactgaaacatttgagttccaggatgaagtgggaatgcttttgttg
tctgtgtgccagactgtgagccgaggaattttgtgctttttgccatcttacaagctgtta
gagaaattaagagaacgttgggttttcactggtttatggcatagtttagagttggtgaag
acagtcattgtagaaccccaaggaggagaaaaaactgactttgatgaattgctgcaggtg
tactatgatgctatcaagttcaaaggagagaaagatggagccctcctcatagcagtttgt
cgtggcaaagtgagtgagggtctggatttctcagatgacaatgcccgtgctgtcataaca
gtaggaattccttttccaaatgtgaaagatctacaggttgaactaaaacgacaatacaat
gatcaccactcaaaactgagaggtctcttgcctggccgtcagtggtatgaaattcaagca
tatagagccttaaatcaggccctcgggaggtgtattcgacacaaaaatgattggggagct
ctcattctagtagatgatcgcttcaataataacccaaatcgctatatatcaggactttct
aagtgggtaaggcagcagattcagcaccactcgtcctttgcaagtgcactggagtccctt
actgagttttctaaagaacaccaaaaagtcactgatctatccaaaaaagacagaaaatgt
ataaaagacagtgagtctactcttgaaatggcctgtctggaggagaacactctgacatct
ctaccagaagcagcaagtcctctagcacgaggaaatcctagggaagaagaagcaaaaatg
tgtgtccagcagccacaatatcctaaaacaaatacgaaaaatctgtcagtactgagtcac
atcacctccagaagggacaaaaatcatccagtattattggaagagtctgcccaggcagtg
aaaacagaaaaaaaggtgatttccaggtccttaagcccaacttttggagaacaaatagat
caagttagctggcctgtctttgattctttaagacagcatttcactggtaaagtacacact
agcacacctgtacttgagtcatcagagagttgtgcctctcctactttcaaaacaaaaaca
gtggaaagcaaaactgttttgccactcactggtaaatgtgagtcctccaatataatacga
gacacgtcacgtgggccatgccctcagtcagaaactactgtttcagcagtgaacattgat
gtcactcctactaagaaagatcattcaacacagctctgctatgagaaagccctacatcca
gatagtgaattgtctccaggaagtgaagaagtcaagcattccagttcaaataaagctctt
gacacagaagcagaagatgactctatatattttacccctgaactttttgatcctatagat
gaagaaagcagtgaactagttgaaactgatatatccagtgatgattcagattgtttcnna
gctgaagacctttttaaaactggaactagaaaaggagcagattcatccnnagaaatgaaa
gctgaagattgcacagacacaaagttaaatggagtcacacctagcaaagaaaaaattgat
atcaatgataatatgacaacttgtataagtgagttggagctgggaaaaacagaatatata
taa
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integrated database retrieval system
