Nannospalax galili (Upper Galilee mountains blind mole rat): 103743302
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Entry
103743302 CDS
T03372
Symbol
Xab2
Name
(RefSeq) XPA binding protein 2
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103743302 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngi03019
]
103743302 (Xab2)
03041 Spliceosome [BR:
ngi03041
]
103743302 (Xab2)
Messenger RNA biogenesis [BR:
ngi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103743302 (Xab2)
Spliceosome [BR:
ngi03041
]
Complex B
Other components
Prp19-related factors
103743302 (Xab2)
Complex C
103743302 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_15
TPR_1
TPR_21
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
103743302
NCBI-ProteinID:
XP_008842763
UniProt:
A0A8C6RBM6
LinkDB
All DBs
Position
Un
AA seq
855 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVADPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDASEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPTQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcgtcccgcggccggagaggccggaccttgtttttgaagaagag
gatcttccctatgaggaagaaatcatgaggaatcagttctcagtcaaatgctggctccgc
tacatcgagttcaaacagggggcaccaaagccccggctcaatcagctgtacgaacgggca
ctcaaactgctgccctgcagctacaaactctggtaccgttatctaaaggcacgccgggca
caggtgaagcatcgctgtgtggcagaccctgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccgtctgtggctagactactgccagtttctc
atggaccagggacgtgtcacacacactcgccgcacttttgaccgtgccctccgagccctg
cccatcacacagcactctcgaatctggcccctgtacctgcgctttctgcgctcccaccca
ctgccagaaactgctgttcgaggctaccggcgcttcctgaagctgagcccagagagcgct
gaggagtacatcgagtacctcaagtccagtgaccggctagatgaggctgcacagcgcctg
gccactgtggtgaacgatgaacgctttgtgtccaaggctggcaagtccaattatcagctg
tggcatgagttgtgtgacctcatctcccagaatccggacaaggtgcagtccctcaatgtg
gatgccatcatccgaggcggcctcacacgcttcacagaccagctgggcaagctatggtgc
tcgctggctgactactacatccgcagtggccactttgagaaggctcgggatgtgtatgaa
gaggccatccgcactgtgatgactgtgcgggatttcacccaggtgtttgacagctacgcc
cagtttgaggagagcatgattgcagcaaagatggagactgcctctgagctggggcgggag
gaggaggatgacgttgacctagaactgcgactggcccgctttgagcagctcatcagtcga
cggccactgctcctcaacagtgtcctgctgcgccagaatccacaccatgtccacgaatgg
cacaagcgtgtggccctacatcagggccgcccccgggagatcataaacacgtacacagag
gctgtacagacagtggatcccttcaaggccacaggcaagccccacaccctgtgggttgca
tttgctaagttttatgaggacaatggacagctggatgatgcccgtgtcatcctggagaag
gccaccaaggtgaacttcaagcaggtggacgacctggctagtgtgtggtgccagtgcggt
gagctagagcttcgccatgagaattacgatgaggccttgaggctgctgcggaaagcaaca
gcactacctgctcgccgggctgagtactttgacgcctcggagccagtgcagaaccgcgtg
tacaaatcactgaaggtgtggtcgatgcttgctgacctggaagagagcctgggtaccttt
cagtcaacaaaggctgtctatgaccgcatcctggacctgcgcattgccaccccacagatt
gtcatcaactatgccatgttcctggaagagcacaagtactttgaggagagcttcaaggca
tatgagcgtggcatttcactattcaagtggcccaatgtgtctgacatttggagcacctac
ctgactaaattcattgcccgctatggaggccgaaagctggagcgggcacgtgacctcttc
gagcaggcgctggatggctgcccacccaaatacgccaaaaccctgtacctgttgtacgca
cagctagaggaggagtggggcctggcccgccatgccatggctgtatatgatcgtgccacc
agggctgtggagcccacccagcagtatgatatgtttaacatttatatcaagcgggctgct
gagatctacggtgtcacccacacccgtggcatctaccagaaggccatcgaggtgctatct
gatgagcatgcccgagagatgtgcctacgctttgcagacatggagtgcaagcttggtgag
attgaccgcgctcgagccatctacagcttctgctcccagatctgcgacccccggacaact
ggggcgttctggcagacatggaaagactttgaggtccggcatggcaacgaggatactatc
agggagatgctgaggatccgacggagcgtgcaggccacgtataacacacaggtcaacttc
atggcctcgcagatgcttaaggtgtcaggcagcgccacaggcactgtgtctgacctggcc
cccgggcagagtggcatggatgacatgaaactattagaacagcgggcagaacagcttgca
gctgaggcagagcgggaccagccctctcgggcccaaagcaagatcttctttgtgaggagt
gatgcatcccgggaggagctggcagagttggctcagcaggccaatcccgaagagatccaa
ctgggcgaggatgaggatgaggatgagatggatctggagcccaatgaagtccgactggaa
cagcagagtgtgccagctgctgtgtttgggagcctaaaggaagactga
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