Nannospalax galili (Upper Galilee mountains blind mole rat): 103746171
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Entry
103746171 CDS
T03372
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3b subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103746171 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngi03041
]
103746171 (Sf3b1)
03036 Chromosome and associated proteins [BR:
ngi03036
]
103746171 (Sf3b1)
Spliceosome [BR:
ngi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103746171 (Sf3b1)
Complex B
103746171 (Sf3b1)
Complex C
U2 SnRNP specific factors
103746171 (Sf3b1)
Chromosome and associated proteins [BR:
ngi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
103746171 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
103746171
NCBI-ProteinID:
XP_008846510
LinkDB
All DBs
Position
Un
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagatccgagaaattcaaggc
aagaaggcagctcttgatgaagcccaaggagtgggccttgattccacaggttattatgac
caagaaatttatggtgggagtgacagcagatttgctggatatgtgacatcaatcgctgca
actgaacttgaagatgatgatgatgactactcatcatctacaagtttgcttggtcagaag
aagcctgggtatcatgcccctgtggcattgctcaatgatataccacagtcaacagaacag
tatgatccatttgctgaacaccgtcctccaaagattgcagaccgggaagatgaatataaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacttacatggatgttatgagagagcaacat
ttgactaaagaagagagagaaattaggcagcaactagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacgaaaacgacgttgg
gatcaaaccgctgaccagactcctggtgccactcccaaaaagctatcaagttgggaccaa
gcagagacccctggacacaccccttctttaagatgggatgagacacccggtcgtgcaaaa
ggaagtgagactcctggagcaacccccggctcaaaaatatgggatcccacacctagtcat
acacctgcgggagctgctactcctggacgaggcgacacaccaggccatgcgacccctggc
catgggggtgctacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagag
agagatactcctggccatggaagtggatgggctgagactcctcgaacagatagaggtgga
gactcaattggtgaaacaccaactcctggagcaagtaaacgaaagtcgcgttgggatgaa
acacccgcaagtcagatgggtggaagcactcctgttctgacccctggaaaaacaccaatt
ggcacaccagctatgaacatggctactcctacaccaggtcacataatgagcatgactcct
gaacagcttcaggcttggcgatgggagagagagattgatgagcgaaaccgcccactttct
gatgaagaattagatgctatgttcccagaaggatataaggtgctccctcctccagctggt
tatgttcctattcgaactccagctcgaaagctgacagcaactcccacacctttgggcggt
atgactggtttccacatgcaaactgaagatagaactatgaaaagtgttaatgatcagcca
tctggaaatctcccatttttaaaacctgatgacattcaatactttgataaactgttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaataatgaaattg
cttttaaaaattaagaatggtacacctccaatgaggaaggctgcattacgtcaaattact
gataaagcccgagaatttggagctggacctttgtttaatcagattcttcctctgctgatg
tctcctacacttgaggatcaagagcgtcatttacttgtgaaagttattgatagaatatta
tacaaacttgatgacttagtacgaccatatgtgcacaagattcttgtagtcatcgagcca
cttttgattgatgaagattactatgctagagtggaaggtcgagagattatttctaatttg
gcaaaggctgctggtctggctaccatgatttctaccatgagacctgacatagataacatg
gatgagtatgtccgaaacacaacagctagagcttttgctgttgtagcctctgccctgggc
attccttctttattgcccttcttaaaagctgtgtgcaaaagcaagaagtcttggcaagcg
agacacactggtattaagattgtacagcagatagctattcttatgggctgtgccatcttg
ccacatctcagaagtttagttgaaatcattgaacatggtcttgttgatgaacagcagaaa
gttcggaccatcagtgctttggccattgccgccttggctgaagcagcaactccttatggt
atcgaatcttttgactctgtactcaaacctttatggaagggtatccgccagcacagagga
aagggtttggctgctttcttaaaggctattgggtatcttattcctcttatggatgcagaa
tatgctaactactatactagagaagtgatgttaatccttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgtactgaaggtggtaaaacaatgttgtggtacagatggt
gtagaagcaaattatattaaaacagagattctgcctcctttctttaaacacttctggcag
cacagaatggctttggatagaagaaattatcgacagttagttgatactactgtggagttg
gcaaacaaagtaggtgcagcagaaattatatctaggattgtagatgatctgaaagatgaa
gctgaacagtaccggaaaatggtgatggaaacaattgagaaaattatgggcaacctggga
gcagcagatattgatcataaacttgaagaacaactgattgatggtatcctctatgctttc
caagaacagactacagaggattcagtaatgttgaatggctttggcacagtagtcaatgct
cttggcaaacgagtcaaaccatacttgcctcagatctgtggtacagttttgtggcgttta
aataataaatcagcaaaagttagacaacaagctgctgacttgatttctcgaactgctgtt
gtgatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgttgtatgaa
tatttgggtgaagagtatcctgaagtattgggcagcattcttggagcactgaaggctatt
gtaaatgtaataggtatgcataagatgacaccaccaattaaagatctcctgcctagactt
acccccatcttaaagaacaggcatgaaaaagtacaagagaattgtattgatcttgttgga
cgtattgctgacaggggagctgagtatgtatctgcaagagagtggatgaggatttgcttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgtagagctacagtcaataca
tttggttacattgcaaaggccattggccctcatgatgtattagctacgcttttaaacaac
ctcaaagttcaggagaggcagaacagagtttgtaccactgtagcaatagctattgttgct
gaaacatgttcacccttcacagtactccctgccttaatgaatgaatacagagttcctgaa
cttaatgttcaaaatggagtattaaaatccctctccttcttgtttgaatatattggtgaa
atgggaaaagactacatttatgctgtaacgcccttacttgaagatgctttaatggatagg
gaccttgtacacagacaaacagctagtgcggtggtacaacacatgtcacttggtgtttat
ggatttggttgtgaagattctctgaatcacttattgaactatgtgtggcccaatgtgttc
gagacatctccccatgtaatccaggcagttatgggagccctagagggcctgagagttgct
attggaccatgtagaatgttgcagtattgcttacagggtctgtttcacccagctcggaaa
gtcagagatgtctattggaaaatttacaactccatctacattggctcacaggacgctctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gattatatcttgtaa
DBGET
integrated database retrieval system
