Nannospalax galili (Upper Galilee mountains blind mole rat): 103746508
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Entry
103746508 CDS
T03372
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03082
ATP-dependent chromatin remodeling
ngi04714
Thermogenesis
ngi05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103746508 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
103746508 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
103746508 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngi03021
]
103746508 (Smarcc2)
03036 Chromosome and associated proteins [BR:
ngi03036
]
103746508 (Smarcc2)
Transcription machinery [BR:
ngi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103746508 (Smarcc2)
Chromosome and associated proteins [BR:
ngi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103746508 (Smarcc2)
PBAF complex
103746508 (Smarcc2)
GBAF(ncBAF) complex
103746508 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
103746508
NCBI-ProteinID:
XP_008846929
LinkDB
All DBs
Position
Un
AA seq
1245 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKSNASHVVHP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDEKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDESSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPEAAKGKPELQSSASQQMLSFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDEARTEGQAADEKKEPKEPREGGGAAEEEPKEKASEAPKKDEEKGKEGDSEKE
SEKNDGDPVGDPEKDKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPTVHGLAVA
PASVAPAPAGSGAPPGSLGPSEQIGQAGSTAVPQQPQPAGAPQPGAVPPGVPPPGPHGPS
PFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPAAPSIIPFGSLADSISIN
LPPPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQ
SPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcgactctggctcggcaagaactataagaagtatatacaa
gcagagccaccaaccaacaagtccctgtctagtctggttgtgcagttgctgcagtttcag
gaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgccgatcaaatgt
ttcctagattttaaagcaggaggatcgttatgccacattcttgcagctgcctacaaattc
aagagtgaccagggatggaggcgttacgatttccagaatccatcacgcatggaccgcaac
gtggagatgttcatgaccattgagaagtccctggtacagaataattgcctgtctagacct
aacatttttctatgcccagaaattgagcccaaacttcttgggaaattaaaagacattatc
aagagacaccagggaacagtcactgaggacaagagcaatgcctcccatgttgtacatcct
gtcccagggaacctagaagaagaggaatgggtacgaccagtcatgaagagagataaacaa
gtgcttctgcactggggctactatcctgacagttatgacacatggatcccagctagtgaa
attgaagcatctgtggaagacgctccaactcctgagaaacctagaaaggttcatgcaaag
tggatcctagacacagacactttcaatgaatggatgaatgaggaagactatgaggtaaat
gatgagaaaaaccctgtttcccgccgaaagaagatctcagctaagacattgacagatgag
gtaaacagcccagattcagatagacgggacaagaagggggggaactataagaagaggaag
cgttctccttctccttcaccaaccccagaggctaagaagaaaaatgctaagaaaggaccc
tcaacaccttacaccaagtcaaagcgtggccacagagaagaggagcaagaagacctgaca
aaagacatggatgagccctctccagtcccaaatgtagaagaggtgacactcccaaaaaca
gtcaacactaagaaggactcggagtcagccccagtcaaaggaggcaccatgactgacctg
gatgaacaagaagatgaaagcatggagaccacgggcaaggatgaggatgagagcagtacg
gggaacaagggagagcagaccaagaacccagacctgcatgaggacaacgtgacagaacag
acccaccacatcatcattcccagctatgctgcctggtttgactacaacagtgttcatgcc
attgaaaggagggctctcccagagttctttaacggcaaaaacaagtccaagactccagag
atctacctggcatatcgaaacttcatgattgacacttaccgactaaatccccaggaatat
ctaacttctactgcctgtcgtcggaacttggcaggtgacgtctgtgctatcatgagggtc
catgccttcctagaacagtggggtcttattaactaccaggtggatgctgagagtcgacca
acccccatgggtcctccacccacttctcacttccatgtcttggcagacacaccatcaggg
ctggttcctcttcagcccaagaccccgcagggccgccaggttgatgctgataccaaggct
gggcgaaagggcaaagagctggatgacctggtgccagaggcggctaagggcaagccagag
ctgcagagctctgcttcccaacaaatgctgagctttcctgacaaaggcaaagagaaacca
acagacatgcagaactttggactgcgcacagacatgtacactaagaagaatgtcccctct
aagagtaaagctgcagccagtgccactcgagagtggacagaacaggagaccctgctactc
ttggaggccctggaaatgtacaaggatgactggaacaaagtatccgaacatgtgggaagc
cggacgcaggatgaatgtatcctccattttcttcgccttcccattgaagacccctacctg
gaggactcagaggcctccttaggccctctggcttaccagcccatccccttcagtcagtcg
ggcaaccctgttatgagcactgttgccttcttggcctccgttgtcgatccccgagtcgcc
tctgctgctgcaaagtcagccctagaagagttctccaaaatgaaggaagaggtgccaaca
gccttggtggaagcccatgttcggaaagtagaagaagcagctaaagtcacaggcaaagca
gacccagccttcggtctggaaagcagtggcattgcaggaaccacctctgatgagcctgag
cgcattgaggagagtgggactgatgaggcacggacagaaggccaggcagcagatgagaag
aaagagcccaaggaaccacgagaaggaggaggggctgcagaggaagaaccaaaggagaaa
gcaagtgaggctcccaagaaggatgaagagaaagggaaagaaggtgacagtgagaaggag
tcagagaagaatgatggggacccagttggtgatcctgagaaagataaggagccgaaggag
ggacaggaggaagtgctgaaggaagttgtggagtccgagggagagaggaagacaaaggtg
gaacgcgacatcggtgagggcaacctctccacagctgctgccgctgccctggctgctgct
gcagtgaaggccaagcacttggctgctgttgaggagaggaagatcaaatctttggtggcc
ctgctggtggagacccaaatgaaaaaattggagatcaaactccgccattttgaggagctg
gagacaataatggaccgggagcgagaagcactggagtatcagaggcagcagctcctggct
gaccgacaagccttccacatggagcagctcaagtacgcagagatgagggcccggcagcag
cacttccaacagatgcaccaacagcagcagcagccaccaccagccctgcccccaggctct
cagcccatacctcccacaggggctgctgggccacccacagtccatggcctagctgtggct
ccagcctcagtggcccctgctcctgctggtagtggggcccctccaggaagcttgggccct
tctgaacagattgggcaggcagggtcaactgcagtgccacagcagccacaaccagctgga
gccccccagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctca
ccgttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcct
cctcctgctgctccatccatcatcccatttggtagtctagctgactccatcagtattaac
cttccccctcctcctaacctgcatgggcatcaccaccatctcccgttcgccccgggcact
ctccccccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcg
accaccaccatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccag
agccctgccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgcca
gacccaggcacccctctgcctccagaccccacagctccaagcccaggcacagttactcct
gtgccacctccacagtga
DBGET
integrated database retrieval system
