Nannospalax galili (Upper Galilee mountains blind mole rat): 103746562
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Entry
103746562 CDS
T03372
Symbol
Topbp1
Name
(RefSeq) topoisomerase (DNA) II binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103746562 (Topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngi03032
]
103746562 (Topbp1)
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103746562 (Topbp1)
DNA replication proteins [BR:
ngi03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
103746562 (Topbp1)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
103746562 (Topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
AcnX
Motif
Other DBs
NCBI-GeneID:
103746562
NCBI-ProteinID:
XP_008847007
LinkDB
All DBs
Position
Un
AA seq
1530 aa
AA seq
DB search
MSRNDQEPFFVKFLKSSDNSECFLKALESIKEFQSEEYLQIITEEEALTIKENDRSLYIC
DSFSGAVFDHLNQLGCRIVGPQVVTFCIHHQQCVPRAEHPVYNMIMSDVTVSCTNLDKEE
REEVHKYVQMMGGRVYRDLNLSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQ
ENKITKYTDVNIEDFKCPVFLGCIICVTGLNSINRKTVQQLTTKHGGQYMGQLKMNECTH
LIVQETKGQKYECAKRWNVHCVTLQWFHDSVKKGFCQDEAIYKAQPRTEKKTAPDTSTPT
GQNIAGSRSLSDVSHISNINGSCVNETMFSSANSKLECTLENLENLDVSAFQAPEDLLDG
CRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYEDDVKQFWSKSSYRPHV
VGAKWLLECFSKGYMLPEEPYTHANYQPVEIPVSNRPENQTALSEKNSSFCMKDFAPDKK
LEQTDEDLLSQYVNNDSAIVGAETSEAAEPHAGPCNGSTPVEPCNDTTYISLQGENQSSV
SHYLLDSAATEQGLFGQKSFLVLGFSVENECNIVDIIREHAGKIVSLPSRIVADYAVVPL
LGCEVEATVGEVVTNTWLVTCLDYQTLVDPKSNPLFTPVPVVARMTPLEDCVISLSQYVG
AEKESLVFLANHLGASVQEFFVRKSNAKKGMLASTHLIVKEPLGSKYEAAKKWNLPAVTI
AWLLESARTGKRADESHFLIDSAPKQEQRLETKIPNGVNLNSDSLAYPVSHVGNLRKRAV
TPLDMNRFQSKAFHAVISQHTQKASDSLTGQPLEKEPSLHLDTPSKFLSKDKLFKPSFDV
TDALAALETPKAASQKERKLSSPLSEVIVKNLKLALANSSRSLASPQLKGSQSEKEEDPK
PLHKVVVYVSKKLSKKQNELNGIAASLGADYRWSFDETVTHFIYQGRPNDSNREYKSVKE
KGVHIVSEYWLLECAQEYKHLPESLYPHTYNPKMSLDISAVQDCQLCNTWAPSAVSASKD
SEPNHLPVEENEVDNMTTDNQESALSIENGRNDCNGALTQTLAIRKNFQKQLQEIMSATC
IVKPQVQRTCLSRSNCNSSSSTPDSARSARSGRSRVLEALRQSRQKVPDINTELSQSEQI
IWDDPTAREERARLASNLQWPSCPTQYSELQVDIEKPEDSPFQEPSYDSEMAKQAVCDPG
SVCVTEASEHSISEEPETSTEDSQLIPTPQAPSIAFPLANPPVANPHVTPQPMEEIETLE
EAHEKLKKRYIFQMSSLNPQERIDYCHLIEKLGGSVLEKQCSDPSCTHMVVGHPLRNEKY
LASMAAGKWVLHRSYLEACRAAGRFVQEEDYEWGSSSILDALTGVTEYQQKLAVAAMRWR
RKIQQRQELGIVECQDAGEQGAFSGWKVILHVDRPREAGFKRLLQAGGAKVLPGHPVPLF
KEATHLFCDFNKLKPHDSRAFIAEAAAQNMACLRTEYIADYLMLEFPPCVENYRLPEATS
LLQNKEPGPGIPQKRKVPPEKKNLKQPRVH
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaatgaccaagaaccgttttttgtgaagtttttaaagtcttcagataattct
gagtgctttttgaaagctcttgagtcaataaaggaatttcaatcggaagaatatcttcag
attattacagaagaagaagcattgacgataaaggagaatgatagatcactttatatctgt
gactcttttagtggtgctgtttttgatcaccttaatcagcttggctgcagaattgttggt
cctcaagtcgtcacattttgtatacaccaccagcaatgtgtcccaagagctgaacatcca
gtttacaatatgattatgtctgacgtaactgtctcctgtacaaacctggataaagaagaa
agggaagaagttcataaatatgtacaaatgatgggtggacgtgtgtacagagaccttaat
ttatcagtaactcaccttattgcaggagaagttggtagcaaaaaatacttagttgctgct
aatctgaagaaacctattttgcttccttcttggataaaaacactttgggagaagtcacaa
gagaacaaaataactaaatatacagacgtgaacatagaagacttcaagtgtcctgtattt
cttggctgcattatttgtgtgactggcttaaatagcataaacagaaagacagttcagcaa
ctcacaactaagcatggaggtcaatacatgggacagctgaaaatgaatgaatgcacacac
ctcattgtgcaagaaacaaagggacagaaatatgaatgtgccaagagatggaatgtacat
tgtgtgaccctgcagtggtttcatgacagtgttaagaaaggtttttgtcaggatgaggct
atatacaaggcacaaccaagaacagaaaagaagactgcgcctgatacttcaacacctact
ggtcagaacatagctggaagtcgtagtctttcagatgtcagccatatatccaacataaat
ggaagctgtgtaaatgaaacgatgttcagttcagctaatagcaaacttgagtgtacactt
gaaaacctagaaaacctggatgtcagtgcttttcaggcacctgaagatctactagatggt
tgtcggatatatctttgtggttttagtggcagaaagctagataagctaagaaggcttatt
aacagtggaggtggagttcgttttaatcaacttaatgaagatgtaactcacgttattgtg
ggagattatgaggacgacgtgaaacagttttggagtaaatcatcctacaggcctcatgta
gtgggagcaaaatggttactagagtgttttagtaaagggtatatgcttcctgaagaacca
tatacacatgccaactaccagccagtcgaaattccagtttcaaatcggcctgaaaaccaa
acagccctctcagaaaagaacagcagtttctgtatgaaagattttgctcctgataaaaag
ctagagcaaactgatgaagatctgctctctcaatatgtaaataatgattctgcaatagtt
ggagctgagacgtctgaagctgcagagcctcatgctgggccttgcaatggttctactcct
gttgagccctgtaatgatactacttatatttctctgcaaggggaaaaccagtcttctgtc
agtcattacctccttgattctgcagctactgaacaaggcttatttggccaaaagagtttc
cttgttttgggttttagtgttgaaaatgaatgtaatattgtagacatcataagagaacat
gctggaaagattgtatcccttcccagcagaattgttgctgattatgctgtggttccattg
ttgggatgtgaagtagaagccaccgtgggagaagttgttacaaatacatggctggttaca
tgtctagactatcagacattagttgatccaaagtcaaatcctctcttcacaccagtcccg
gtagtggcaagaatgactcctctagaggattgtgtgatttcactcagccaatatgttgga
gcggaaaaagagtccttggtattcttagcaaatcaccttggagcaagtgttcaagaattc
tttgttcgcaaatccaatgcaaagaaaggcatgcttgccagtacacatcttatagtgaaa
gaaccacttggttctaaatatgaagctgcaaagaagtggaatttaccagcagtcactatt
gcatggctgttagaaagtgctagaacgggaaagagagcagatgagagccactttctgatc
gacagtgcacctaaacaagaacaaagattggaaactaagataccaaatggagtaaatcta
aattcagattctctagcatatcctgtctcacacgtgggaaatctcaggaaaagagctgtt
acacctttggacatgaaccgttttcagagtaaagctttccatgctgtgatctcacagcac
acccagaaggcttcagactctctaacaggacagccacttgagaaggagccctctttacac
ctggacacaccatcgaagtttctgtctaaggacaaacttttcaagccttcctttgatgtg
acggatgcccttgcagccttagaaactccaaaagctgccagccagaaggaaagaaaactg
agttcaccactctcagaagttatcgtcaaaaacttgaaacttgctttggcaaatagctct
cgaagtcttgccagcccccaactgaagggttcccaatcagaaaaggaggaggatccaaag
ccacttcacaaagttgtggtatatgtgagtaaaaagctcagtaagaagcagaatgagcta
aatgggatcgcagcctcgctaggagcagattacaggtggagttttgatgagacagtgact
cattttatctatcaaggtaggccaaatgatagcaatcgagagtataagtctgtgaaagaa
aaaggagttcacatagtttcagagtattggcttctagagtgtgcccaggaatataagcat
cttcctgaatctctttatccacacacttacaatcccaaaatgagcctggacatcagtgct
gtgcaagattgccaactctgtaacacctgggcaccctcagctgtttctgcgtctaaggac
agtgagccaaatcatttgcctgtagaagaaaatgaagtagataatatgaccacagataat
caagaatcagcactatccattgaaaatggaaggaatgattgtaatggagctctaacacag
accttggcgataagaaaaaacttccagaagcagctgcaggagataatgtcagctacctgc
atcgtgaagccacaggtgcagaggacttgcctgtcaagaagcaattgtaacagctcttct
tcaacccctgacagtgctcgctctgctcggagtggaagaagtcgagtcctggaggcgctc
aggcagtctcgacaaaaagtgcctgacatcaacacagaactctcccagagtgagcaaatc
atttgggatgacccaacagcgagggaggagagagcgaggctcgccagcaacttgcagtgg
cctagctgtcccacacagtattctgagcttcaggttgacattgaaaaaccggaagattct
ccttttcaagagccttcatatgattcagaaatggccaaacaggctgtttgtgatcctgga
agtgtgtgtgtgactgaagcctctgaacactcaatctctgaagaaccagaaacttcaaca
gaagacagtcagctaatccccacaccacaagcccccagcattgctttccccctggccaac
ccacctgtggccaacccacatgtgactccacaacctatggaggagattgaaacactggag
gaggctcatgaaaaactgaaaaaacggtatatattccagatgtcctcgctgaatcctcaa
gaacggattgattattgtcacctgattgaaaaactaggtgggtctgtgttagagaagcag
tgctctgaccccagctgtacacacatggttgtgggacacccacttcgcaacgagaagtac
ttagcctccatggccgctgggaagtgggtgcttcatcgctcctacctggaagcatgcaga
gctgctgggcgcttcgtgcaggaagaagactatgaatggggaagcagttccatacttgat
gctctgactggcgtcactgagtaccagcaaaaactagcagttgcggcaatgaggtggaga
agaaaaattcagcaaagacaagaattaggcattgttgagtgccaggatgcaggtgagcag
ggagcatttagcgggtggaaggttattttacatgttgatcgaccccgagaagcagggttc
aagcgccttcttcaggcaggaggagcaaaggtgttacctggccatcctgtacctttattt
aaagaagccacacatctcttttgtgattttaataaactgaaaccacatgactccagagcc
ttcatagcagaggctgctgcccagaacatggcctgcttgagaacagagtacattgctgat
tatctcatgctggaattccctccttgtgtagagaattaccgtctaccagaggctacttca
cttcttcaaaataaggagcctgggcctgggataccccaaaagagaaaagttcccccagag
aagaagaacctcaaacagcctcgggtacactaa
DBGET
integrated database retrieval system
