Nannospalax galili (Upper Galilee mountains blind mole rat): 103747027
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Entry
103747027 CDS
T03372
Symbol
Rad50
Name
(RefSeq) RAD50 double strand break repair protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03440
Homologous recombination
ngi03450
Non-homologous end-joining
ngi04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103747027 (Rad50)
03450 Non-homologous end-joining
103747027 (Rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
103747027 (Rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngi03032
]
103747027 (Rad50)
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103747027 (Rad50)
DNA replication proteins [BR:
ngi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
103747027 (Rad50)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
103747027 (Rad50)
BRCA1-C complex
103747027 (Rad50)
NHEJ (non-homologous end-joining)
MRX complex
103747027 (Rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
DUF2703
AAA_29
Motif
Other DBs
NCBI-GeneID:
103747027
NCBI-ProteinID:
XP_008847539
LinkDB
All DBs
Position
Un
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGEFVAVQRSMVCSQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISCLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALDTLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITNKEAQLMSSKEI
VKSYENDLEPLKNRLKEIEHNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKVEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADGH
QEHVRARDSLIQSLAAQLELDGFERGPFSERQIKNFHRLVRERQERETESANKLLIDFTE
KETLKQRQIDEIRDKKTGLGRIIELKTEILRRKQTELKNVKLELQQLEGSSDRILELDQE
LTKAERELSKAEKNSNVETLKAEVMSLQNEKTDLDRTLRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSEELTSLLGYFPNKNQLEDWLHSKAKEINQTRDKLAKLNKE
LASAEQNKNHINNELKKKEEQLSSYEEKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPLRQSIIDLKEKEIPELRNKLQSVNRDIQRLKNDIEEQETLLGTIMP
EEESAKMCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQYLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTDVQS
LCREIKDAKEQIHPLETTLEKFQQEKEELVNRKHASDRQAQDKINDIKEKIKNIHGYMRD
IESYIQDGKDDYKKQKETELNGVIAQLNECDKNKERISKEMGVMRQDIDTQKVQERWLQD
NLTLRKRKEELKEVEEERKQHLKEMGQMQVLQMKNERQKLEEDIDNIKRNLSVALGRQKG
YEEEIIHFKKELREPQFRDAEEKHREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKVIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLIITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSINSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcatcttgggcgtgcgcagctttgggatagaggataag
gacaagcagattatcaccttcttcagtcccctcacaattctggttggacccaatggggca
gggaagacgaccatcattgagtgtctgaagtacatctgtactggtgatttccctcctgga
accaaaggaaatacatttgtccacgatcccaaggttgctcaggaaacagatgtgagagcc
cagattcgcctgcaatttcgtgatgtcaatggagaatttgtggctgtgcagagatcaatg
gtgtgcagtcagaaaagcaagaaaacagagtttaaaaccctggaaggcgtcattaccaga
acgaagcatggtgaaaaggtcagcctcagctctaaatgtgcagaaatcgaccgagaaatg
ataagttgtcttggggtttcgaagtctgtgctaaataatgtcatattctgtcaccaagaa
gattctaattggcctctaagtgaaggcaaagccctgaagcagaagtttgatgagatcttc
tcagcaacaaggtacattaaagccttagatacacttcgtcaggtacgtcagacacaaggc
cagaaagtgaaagaatgccaaacagaattgaaatatctgaagcaaaataaggaaaaagct
tgtgagattcgtgatcagattaccaataaggaagcacagttaatgtcttcaaaggagatc
gtcaagtcttacgagaacgatctagagccattgaagaatcgcctaaaagaaattgaacac
aatctgtctaaaataatgagactcgacaatgaaatcaaagccttggatagccggaagaag
caaatggagaaagataacagcgagctcgagcagaaggtggaaaaggtttttcaagggaca
gatgagcaactgaatgatttgtatcacaaccaccagcggacagtaagagagaaagaaagg
cgattggtagactgtcagcgagaactagaaaagttgaataaggagtctcggcttctcaat
caggagaagtcagagctgcttgttgaacaaggtcgcctacagctgcaggcagatggccat
caggaacatgtccgggccagagattcgctcattcagtccttggcagcacagctggaattg
gatggcttcgagcgtggaccattcagtgaaagacagattaaaaactttcacagacttgtg
agggagagacaagagagagaaacggaaagtgccaacaagctgctgattgacttcacagaa
aaagaaaccttgaagcaaagacaaatagatgagataagggataagaagacaggactggga
agaataattgagctgaaaacagaaatcctaaggaggaagcagactgagctgaagaatgtg
aagttggaattgcagcagctggaaggttcgtcagacagaatcctcgagctggaccaggag
ctcacaaaagctgaacgtgagctaagcaaggctgagaaaaacagcaatgtagaaactcta
aaagcagaagtaatgagcctccaaaatgagaagaccgacctagacaggaccttacggaag
ctggaccaggagatggagcagttaaaccatcacacaacaacccgcacgcagatggagatg
ctaaccaaagacaaagctgacaaagatgaacaaatcagaaaaataaagtctaggcacagt
gaggaactaacctcattgttggggtattttcctaacaaaaaccagcttgaagactggctt
cactctaaagcaaaagaaattaatcagaccagggacaagcttgccaaattgaacaaagaa
ctagcttctgcagagcaaaataaaaatcatataaataatgagctaaagaaaaaggaagaa
cagttgtccagttatgaagaaaagctatttgatgtttgtggtagccaggactttgaaagt
gatttagatagacttaaagaagaaattgaaaaatcctcaaaacagcgcgccatgctggct
ggagccacagcggtttattcccagttcattactcagctaacagatgaaaaccagtcctgc
tgcccagtctgtcagagagttttccagacagaggctgaattacaggaagtcatcagtgac
ttgcagtccaagctgcggcttgctccagataaactcaagtcaacagaatcagaactaaag
aagaaagaaaagcgccgtgacgagatgctggggcttgtgcccttgaggcaaagcataatt
gatttgaaggaaaaggagataccagagttaagaaacaaactgcagagcgtcaatagagac
atccagcgcctgaagaatgacatagaagaacaggaaacactcttgggtacaataatgcct
gaagaagaaagtgcaaaaatgtgtctgacagatgtcacaatcatggagaggttccagatg
gagcttaaagatgttgagagaaaaattgcacaacaagcagctaagctacaaggaatagac
ttggatcgaactgtccaacaagttaaccaggaaaaacaagaaaagcagcacaaactggat
acagtttccagtaagattgaattgaatcgtaagctcatacaggaccagcaggaacaaatt
caatacctaaaaagtaccacaaatgaactgaagtcagagaaactgcagatatccactaat
ttgcagcgtcgtcagcaactggaggagcagacagtggagttatccactgacgttcagtct
ttatgcagagagataaaggacgcaaaggagcagatacaccccttggaaacaacattggaa
aagttccagcaggaaaaagaagaactagtcaacaggaagcatgcaagtgacagacaagcc
caggacaaaatcaatgatatcaaagagaagattaaaaacattcatggttacatgagagac
attgagagctatattcaagatggaaaagacgactataagaagcaaaaggaaactgaactt
aatggagtcatagctcagcttaatgaatgtgacaagaacaaagaaaggataagtaaagaa
atgggagtcatgagacaagacattgacacccagaaggtacaggagagatggctgcaggac
aaccttactttaagaaaaagaaaagaggaactgaaggaagttgaagaagaaagaaaacaa
catttgaaggaaatgggacagatgcaggttttacaaatgaaaaatgagcgtcagaagctg
gaagaggacatagacaatatcaaaagaaatctcagcgtggctctagggcgacagaaaggt
tatgaagaagaaattattcattttaagaaagaacttcgagaacctcagtttcgggatgct
gaggaaaagcacagagagatgatgattgttatgaggacaacggagctggtgaacaaggac
ctggacatctactacaagactctagaccaagcaataatgaagtttcacagtatgaaaatg
gaagaaatcaataaggttattcgtgatctgtggcgaagtacctatcgtggacaagatatt
gaatacatcgaaattcggtcagatgctgacgaaaatgtatcagcttctgataaaaggcgg
aattataactaccgagtggtgatgctgaagggagacacagctttggacatgcgaggacgg
tgcagcgccggacaaaaggtgttggcttctctcatcatccgcctggcactggctgaaacc
ttctgcctgaactgtggcatccttgccttggatgagcccacaacaaatcttgaccgtgaa
aacattgaatctctcgcacatgctctggttgagataataaaaagtcgctcacagcagcgt
aacttccagcttctgataatcactcacgatgaagattttgtggagctcttaggacggtct
gagtacgtggagaaattctacaggatcaagaagaacattgaccaatgctcagagatcgtg
aagtgcagcattaactctctgggctcttacgttcactga
DBGET
integrated database retrieval system
