Neisseria gonorrhoeae NCCP11945: NGK_1292
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Entry
NGK_1292 CDS
T00728
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ngk
Neisseria gonorrhoeae NCCP11945
Pathway
ngk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NGK_1292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngk03400
]
NGK_1292
Enzymes [BR:
ngk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NGK_1292
DNA repair and recombination proteins [BR:
ngk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NGK_1292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
ERCC3_RAD25_C
UB2H
AAA_30
HemY_N
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ACF29967
UniProt:
B4RMD2
LinkDB
All DBs
Position
1060220..1063924
Genome browser
AA seq
1234 aa
AA seq
DB search
MTCPIPKPREKSRWFNLSQGSLPLALARYLPHKRLKAVLTQDAEQALRLQTAWRFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSETPYRIDLF
DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWNDVKSRYAM
AQGDETYPPLLPQHLYLSADVFAGRLKNYGQVLPDVSGKAHSLPDLAVNRQSDEPLQALK
DFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSSSQQQTVPASEGEGKAVTDQTEFSASATNPLPSPLPQEREQSAAAVSDGLKA
AAVSTESSLYLVASDLHGQTRQQSAPSPVGEGWGEGKAVAAQSAIAVITESDLYQYVARS
RVHNRRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYTGLVTMDLGGETNEMMLLEYA
GEAQLYVPVSQLHLISRYSGQAHESVALHKLGSGAWNKAKRKAAEKARDTAAELLNLYAQ
RAAQSGHKFEINESDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGK
TEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKATKA
TLEGMADGTVDIVIGTHKLVQDDIKFKNLGLLIIDEEHRFGVRQKEQLKRLRANVDILTM
TATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFF
LHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETG
IDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAA
DELGAGFTLAMQDLEIRGAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDA
PLGITTEIKLHSPALLPEDYCPDIHERLVLYKRLAVCETVQKINAIHEELVDRFGLTEQP
VKTLIESHHLRLAAKELGIDAIDATSEAVTVTFGKHHCIDPTGIILLIQTDKKYRLAGAD
KLRFAAEMENIEVRINTVKTVLKTLQGKRLPKGN
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgacctgccccatccccaaaccccgtgaaaaatcccgttggttcaatctttcgcaaggc
tcgctgcccttggctttggcgcgttatttgccgcacaagcggctcaaagccgtgctgacc
caagatgcggaacaggcgttgcgccttcagacggcatggcggtttttccgtccgcacgac
acggcggtgttcctgccggactgggaaacgctgccttacgagcgtttttctccgcatcag
gatttggtgtcggagcggctgtcggcgttgtggcagattaaaagcggcgcggcggacgtg
ttgttcgtaccggttgccacggcgatgcagaagctgccgcccgtgccgtttttggcgggg
cgcacgttttggctgaaaacggggcagactttggatataggccgcctgaaaaccgatttg
gtggatgcgggctacaatcatgtttcccacgttgtcgcggcgggcgagtttgccgtgcgc
ggcggcattgtcgatttgttcccgatgggcagcgaaacgccgtaccgcatcgatttgttt
gacgatgaaatcgacagcattaaaaccttcgataccgacacgcagcgcaccatttccccc
gtttccgaaatccgcctgctgccggcgcacgagttccccaccgacagcgaggcgcaaaaa
atcttccgcagccgcttccgcgaggaagtcgacggtaatccgaacgatgccgccgtgtac
aaagccgtcagcaacggccacttcggcgcgggcgtggaatattatctgccgctgtttttt
gaaaacgagctggaaacgctgtttgactatatcggcgaagatgcgctgtttgtctctttg
ggcgatgttcatgccgaggcaaaccgcttttggaacgacgttaaatcacgttacgccatg
gcgcagggcgacgaaacctatccgcctttgcttccacagcatttgtatctctctgccgat
gtgttcgcaggccgtctgaaaaactacggacaagttctgcctgatgtttccggcaaggca
cactccctgcccgaccttgccgtcaaccgccaatccgacgagcctttgcaggcattgaag
gattttcagacggcctttgacgggcggattttgctgtgtgccgaaagtttgggacggcgc
gaaaccatgctcggtttcttgcagcaaaacggtttgaaagccaaacctgtgtccgactgg
cagggcttcttgtcggcgcacgagccgctgatgattacggtcgcgccgttggcttacgga
ttcaaactgggcggactgcaatcttcaagccaacagcaaactgttcccgcctccgaggga
gaaggcaaagcggttaccgaccaaaccgaattttccgcatccgcaacaaaccctctcccc
agccctctcccgcaggagagggaacaaagtgccgccgccgtttcagacggcctgaaagca
gccgccgtttcaaccgaaagcagcctgtatctcgtcgcaagtgatctgcacgggcaaacc
cgacagcaatctgccccctcccccgtgggggagggttggggagagggcaaagcggttgcc
gctcaaagtgccatcgccgtcatcaccgaatccgatctttaccaatacgtcgcccgttcc
cgcgtccacaaccgccgtaagaaacacgccgctgtttcagacggcctgttgcgcgacctt
gccgaaatcaatatcggcgatcccgtcgtgcacgaagaacacggcatcgggcggtatacg
ggcttggtaacgatggatttaggcggcgaaaccaacgaaatgatgttgctcgaatacgcg
ggcgaagcgcagctttatgtgcctgtttcgcaactgcatttaatcagccgctactccggt
caggcgcatgaaagcgtcgccctgcacaagctcggcagcggcgcgtggaacaaggcgaag
cgcaaagccgccgaaaaagcgcgcgataccgccgccgagttgctcaacctctacgcccaa
cgcgccgcccaatcgggacacaagtttgaaatcaacgagtcggactatcaggcgtttgcc
gacggcttcggctacgaggaaaccgaagaccaggccgccgccatcgccgccgtgattaaa
gatttgacgcaggcgaagccgatggaccgacttgtgtgcggcgatgtcggtttcggcaaa
accgaagtcgccctgcgcgccgcgtttgtggcggtgatgggcggcaaacaggtcgccgta
ctcgccccgaccacgcttctggtcgagcagcacgcgcaaaacttcgccgaccgtttcgcc
gatttccccgtaaaagtcgccagcctttcgcgtttcaacaacagcaaagccaccaaagcc
acgctcgaaggcatggcggacggtactgtcgatatcgttatcggtacgcacaaattggtg
caggacgacataaaattcaaaaacttaggtttattgattatcgatgaagaacaccgcttc
ggcgtgcgacagaaagagcagctcaaacgcctgcgcgccaatgtcgacatcctaaccatg
accgccacgccgattccgcgcaccctcagcatggcgctcgaaggtctgcgcgacttctcg
ctgattaccactgcaccgagccgccgcctcgccgtgaaaacctttgtcaaaccgttcagc
gaaggcagcgtgcgcgaagccgtgttgcgcgaactcaaacgcggaggacaggtatttttc
ctgcacaatgaagtagatacgattgagaatatgcgcgagcggctggaaaccctgctgccc
gaagcccgtatcggcgtggcgcacggacaactgcgcgagcgcgagctggaacaagtcatg
cgcgactttttgcagcaaagattcaatgtgttgctctgttccaccatcatcgaaaccggc
atcgacatccccaacgccaacaccatcatcatcaaccgcgccgacaaattcgggctggcc
caactgcaccagcttcgcggacgcgtcggccgcagccaccaccaagcctacgcctacctg
ctcacgcccgaatacatcaccaaagacgcagaaaaacgcctcgacgccatcgcggcggca
gacgaactcggcgcaggtttcaccctcgccatgcaggatttggaaatccgaggcgcaggc
gaaatcctcggcgaaggacaatccggcgaaatgatgcaggtcggcttcacgctctacacc
gaaatgctcaaacaggccgtgcgcgacctcaaaaaaggccgccaacccgacctcgacgca
ccgttgggcattaccaccgaaatcaaactgcacagcccggcattactgcctgaagactac
tgccccgacatccacgagcgcctcgtcctctacaaacgcctcgccgtatgcgaaaccgtg
cagaaaatcaacgccatacacgaagaactcgtcgaccgcttcggcctgaccgaacaaccc
gtcaaaaccctcattgaaagccaccacctgcggcttgcggcaaaagaactgggtattgat
gccatcgatgccacaagtgaagccgtaaccgttaccttcggcaaacaccactgtatcgac
ccgacggggattatcctgctgattcagacggataaaaaataccggctggcaggggcagac
aaattgaggtttgcagcggaaatggaaaacatcgaggtcaggatcaataccgtcaaaacc
gtactaaaaaccctgcaaggcaaacgcctgcccaaaggaaattga
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