Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141: RG1141_CH12130
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Entry
RG1141_CH12130 CDS
T03208
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ngl
Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
Pathway
ngl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RG1141_CH12130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngl03019
]
RG1141_CH12130
03016 Transfer RNA biogenesis [BR:
ngl03016
]
RG1141_CH12130
Enzymes [BR:
ngl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RG1141_CH12130
Messenger RNA biogenesis [BR:
ngl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RG1141_CH12130
Transfer RNA biogenesis [BR:
ngl03016
]
Prokaryotic type
tRNA degradation factors
RG1141_CH12130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
CDN53568
UniProt:
A0A068T503
LinkDB
All DBs
Position
complement(1164218..1166572)
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AA seq
784 aa
AA seq
DB search
MREPRDRSKHQGKRPDKAIRGHTASTTEKPVIIHGAVPPRDVLLEFIAENPDKGSKREIA
KAFGLKGDTRVELKDLLRTLEEEGLLKKSRKSLTRPDALPPVTVLDITTRDKDGELIGRP
AEWPEDLGAAPAVLIRQSSDSRGKGRVAAAGLNDRVLAKIFPNKDRTGPAYTARVIKIID
KRRGASLGIVHKLADGELRLLPIDRRGEEMVIEPADIGEAKDGDLVESEVVRSGRFGLPR
ARVLSIVGTIGSEKAISMIAVYSHGIPHIFPKQVMDEAEAARPATMAQREDWRSLPLITI
DPADAKDHDDAVYAELDPSPDNPDGVIVTVAIADVSWYIRTGSPLDREALKRGNSVYFPD
RVVPMLPERISNDLCSLREGEDRPALAVRMVFSKEGRKAGHTFHRIMMKSAAKLSYQQAQ
AAIDGKPDDKSGPLLEPILKPLWRAYGVMKRGRDRRQPLELDMPERKILLKPDGTVDRVF
VPDRLDAHKLIEEMMIQANVAAAETLEKKRQALIYRIHDTPSLAKQETLREFLATLGIPM
AKGGQMRANSFNGILAKAEGTAHQVMVNEMVLRSQSQAIYSPDNIGHFGLNLMKYAHFTS
PIRRYADLIVHRALVGSLGLGEGGIKPEEEAQLDDIAAEISTFERRAMAAERDTINRLIA
HHLSERIGEEFVGRVSGVTKAGLFVSLPTYGADGFIPISTLGNDYFIYDEAHQALSGEKT
GLGYQIGDTVDVRLKQAIPLAGALQFEMLSEGKKLPTATRSFHKSGRRGRTQPGTRPPRS
GRRR
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
gtgagagaaccgcgcgacagatcgaaacaccagggaaaacgccccgacaaagccatccgc
ggccacaccgcttccacaacggaaaagccggtgatcatccacggtgcggtgccgccgcgc
gatgtcctgctcgagttcatcgccgaaaacccggacaaggggtcgaagcgggagatcgcc
aaggccttcgggctgaagggcgacacccgcgtcgagctgaaggacctgcttcggacgctg
gaggaagaaggccttctcaagaagagccgcaagtcgctcacccgtcccgacgcgctgccg
ccggtcaccgttctcgacatcaccacccgcgacaaggacggcgagctgatcggccgtccg
gccgaatggccggaggacctgggtgcggcgcctgcggtgctcatccgtcagtcgtccgac
agccgcggcaagggcagagtggctgctgccgggctcaacgaccgggtgctcgcaaaaatc
ttcccgaacaaggaccggaccgggcccgcctataccgcccgcgtcatcaagatcatcgac
aagcgccgcggggcctcgctcggcatcgtccacaagcttgccgatggcgaattgcgcctg
ctgccgatcgaccggcgcggcgaggaaatggtgatcgagcccgccgatatcggcgaggcc
aaggacggcgacctggtcgagagcgaggtcgtccgttccggccgcttcggccttccgcgc
gcccgggttctgtcgatcgtcggtacgatcggctcggaaaaggcgatctcgatgatcgcc
gtctattcgcacggcatcccgcatatcttcccgaaacaggtgatggacgaggccgaagcg
gccaggcccgccaccatggcgcaacgcgaggactggcgttcgctgccgctgatcaccatc
gaccccgccgacgccaaggaccatgacgacgcggtctatgccgagctcgacccctcgccg
gacaatccggacggcgtcatcgtcaccgtggcgatcgccgacgtctcctggtatatccgc
accggctctccgctcgaccgcgaggcgctgaagcgcggcaattcagtctatttcccggat
cgcgtcgtgccgatgctgccggagcgcatttccaacgatctctgctcgctgcgtgaaggc
gaagaccggcccgcacttgccgtgcgcatggtgttttcgaaagaaggccgcaaggccggc
cacacgttccaccggatcatgatgaagagcgccgccaagctttcctatcaacaggcccag
gcggcgatcgacggcaagccggacgacaagagcgggccgctgctcgaaccgatcctgaag
ccgctgtggcgtgcctatggggtgatgaagcgcggtcgtgaccgccgccagccgcttgaa
ctcgacatgccggagcgcaagatcctgctgaagcccgacggcacggtcgaccgggtcttc
gtgccggaccggctcgacgcgcacaagctcatcgaagagatgatgatccaggcgaatgtc
gccgccgccgagacgctggagaagaagcggcaggcgctgatctaccgcatccacgacacg
ccctcgcttgccaagcaggagacgctgcgcgagtttctcgcgacattgggcattccgatg
gccaagggcggccagatgcgggccaactcgttcaacggcattctcgccaaggccgagggc
accgcgcaccaggtgatggtcaacgagatggtgctgcgctcccagagccaggcgatctac
agccctgataatatcggccatttcggcctcaacctgatgaaatacgcgcatttcacctcg
ccgatccgccgttacgccgacctcatcgtgcatcgcgcgctggtcgggtcgttgggcttg
ggcgaaggcgggatcaagccggaggaagaggcgcagctggacgatatcgccgccgagatc
tccaccttcgagcgccgcgccatggccgctgagcgcgacacgatcaaccgcctgatcgcc
caccatctgagcgaacgcattggcgaggaattcgtcggccgcgtctccggcgtcaccaag
gcgggactatttgtctcgcttccgacctatggcgcggacggattcatacctatatccacg
ctcggcaacgactacttcatctatgacgaggcgcatcaggcgctgtccggagagaagacc
ggtctcggttaccagatcggcgatacggttgacgtgcggctgaagcaggcgatcccgctt
gccggcgcgctgcagttcgaaatgctgagcgagggcaagaaattgccgaccgcgacccgc
tccttccataaatcggggcggcgcggccggacccaacccggcacgcggcctccgcggagc
ggccgaaggagatag
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