Nonomuraea gerenzanensis: LCN96_04655
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Entry
LCN96_04655 CDS
T07782
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCN96_04655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngn03021
]
LCN96_04655
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_04655
Enzymes [BR:
ngn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCN96_04655
Transcription machinery [BR:
ngn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCN96_04655
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCN96_04655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
UBU14322
LinkDB
All DBs
Position
896642..900517
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITHVDTEMRERDLPSLEAKISVERQHIEQRRDADVEARQKKLEAD
LAELEAAGAKGDQRRKVREGAEREMRQLRDRAQRELDRLDEVWSRFKNLKVQDLEGDELL
YREMRDRFGRYFKGGMGAQAIQDRLISFDLDAEAENLRETIRSGKGQKKARALKRLKVVS
AFLNTTNSPRGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPADGKPVTMPTQDMVIGLYWLTTQKDGALGEGR
VFGSIAEAQMAFDRRELEIQAKIQIRLKDVLPPREWVAPEGWEQGDPIRLETTFGRCLFN
QTLPDSYPFVDFQVGKKQLSTIVNELAETYPKIEVANSLDALKDAGFRWATRSGVTISIE
DVVAPPNKQDIMENYERRADKVQREYERGLITDEERRQELIEIWTHATADVETDMVNAFP
ATNPVWMMVNSGARGNKMQVRQIAGIRGLVSNTKGETIPRPIKASFREGLSVLEYFISTH
GQRKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTDRAVPLHVADRDASGNLVKAE
NAESNVHGRILAEDVEVDGKIIVPAGVDINDLHVTKLVEAGVETVRTRSALVCEAKIGVC
ATCYGRSLATGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGADITHGLPRVTEL
FEARIPKGVAPISEAEGRVRIDETDKTRKIVITPDDGSEEIAYPVSMRSRLLVQEGQRVS
VGQQLVAGAVNPNEVLRILGPRAVQLHLVAEVQQVYRSQGVSIHDKHIEIIVRQMLKRVN
VLESGDTDLLPGELVERPRFEQMNRETVAEGGSPAAGRPVLMGITKASLATESWLSAASF
QETTRVLTDAAIHAKSDSLLGLKENVIIGKLIPAGTGMPQYRNIRVEPTEEAKAAMYTVG
GYDGSAADYTFGTGSGEAVPLEEYDFGQYNR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgctagacgtcaacttcttcgacgagctcaggatcggtcttgcgacggctgacgacatc
cgtcagtggtcgcacggcgaggtcaagaagcccgagacgatcaactaccgaaccctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtccgacccgcgactgggagtgc
tactgcggtaagtacaagcgcgtccggttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacgcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgttccctcgcgcctgggctacctgctcgacctg
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgcatgtcgac
accgagatgcgtgagcgtgacctgccctcgctggaggcgaagatctccgtcgagcggcag
cacatcgagcagcgccgcgacgccgacgtcgaggcccggcagaagaagctcgaggccgac
ctggccgagctggaggccgccggcgccaagggcgaccagcgccgcaaggtccgcgagggc
gccgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgtgagctggaccggctcgac
gaggtctggagccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagatgcgcgaccgcttcggccgctacttcaagggcggcatgggcgcgcaggcg
atccaggaccgcctgatcagcttcgacctcgacgccgaggccgagaacctgcgcgagacg
atccgcagcggcaagggccagaagaaggcccgcgctctcaagcggctcaaggtcgtctcg
gcgttcctgaacaccaccaactcgccgcgcggcatggtgctcgactgcatcccggtcatc
ccgccggacctgcggccgatggtgcagctcgacggtggccggttcgccacgtccgacctc
aacgacctgtaccgccgggtcatcaaccgcaacaaccgcctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtggacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggcaaccggccgctgaag
tccctcagcgacatgctgaagggtaagcagggccggttccgccagaacctgctgggcaag
cgagtcgactactccggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctc
gtggacctcaaccacgcgcagaacatcaagtcggccaagcggatggtcgagcgcgcccgc
cccgtggtgtgggacgtgctcgaagaggtcatcaccgagcacccggtgctgctcaaccgc
gctccgacgcttcaccgtctgggcatccaggcgttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctgtcggctgaggcccaggccgaggcgcgcatcctgatgctc
tcgaccaacaacatcctcaagccggccgacggcaagcccgtcaccatgcccacccaggac
atggtgatcggcctctactggctgaccacccagaaggacggcgcgctgggcgagggccgc
gtgttcggctcgatcgccgaggcgcagatggccttcgaccgccgtgagctggagatccag
gcgaagatccagatccggctcaaggacgtcctgccgccgcgcgagtgggtggcccccgag
ggctgggagcagggcgacccgatccgcctggagaccacgttcgggcggtgcctgttcaac
cagacgctgccggacagctaccccttcgtcgacttccaggtcggcaagaagcagctgtcg
acgatcgtgaacgagctggccgagacctaccccaagatcgaggtcgccaactcgctcgac
gcgctcaaggacgccggcttccgctgggcgacccgctccggtgtcacgatctcgatcgag
gacgtcgtcgcgccgcccaacaagcaggacatcatggagaactacgagcgccgggccgac
aaggtccagcgcgagtacgagcgcggcctgatcaccgacgaggagcgccgtcaggagctc
atcgagatctggacgcacgcgacggccgacgtcgagaccgacatggtcaacgccttcccg
gcgaccaacccggtctggatgatggtcaactccggtgcccgtggtaacaagatgcaggtc
aggcagatcgccggcatccgtggcctggtgtccaacaccaagggtgagacgatcccgcgg
ccgatcaaggcctcgttccgcgagggcctgtcggtgctggagtacttcatctccacccac
ggtcagcggaagggtctggccgacaccgctctgcgtaccgccgactcgggttacctgacc
cgtcgtctggtggacgtggcgcaggacgtcatcgtccgcgagatcgactgcggcaccgac
cgcgcggtcccgctgcacgtggccgaccgcgacgcgtcgggcaacctggtcaaggcggag
aacgccgagtccaacgtgcacggccgcatcctggccgaggacgtcgaggtcgacggcaag
atcatcgtcccggcgggggtcgacatcaacgacctccacgtgacgaagctggtcgaggcc
ggcgtcgagaccgtccgcacccgcagcgcgctcgtctgcgaggccaagatcggggtctgc
gcgacctgctacggtcgctcgctggccaccggcaagctcgtggacgtcggcgaggcggtc
ggcatcatcgccgcccagtcgatcggtgagcccggcacgcagctgacgatgcgtaccttc
cacaccggtggtgtggccggtgccgacatcacccacggtctgccccgtgtcacggagctc
ttcgaggcgcgcatccccaagggtgtcgccccgatctccgaggccgagggccgggtccgc
atcgacgagaccgacaagaccaggaagatcgtcatcaccccggacgacggctccgaggag
atcgcctacccggtctcgatgcgctcgcgcctgctcgtgcaggaggggcagcgcgtctcg
gtcggtcagcagctcgtcgccggtgccgtcaacccgaacgaggtgctgcgcatcctcggc
ccgcgggccgtgcagctgcacctggtggcggaggtccagcaggtctaccgctcgcagggt
gtgtcgatccacgacaagcacatcgagatcatcgtgcggcagatgctcaagcgcgtgaac
gtgctggagtccggtgacaccgacctgctgcccggcgagctggtggagcgtccgcgcttc
gagcagatgaaccgcgagaccgtggccgagggtggctcgcccgccgccggccgtccggtg
ctcatgggcatcacgaaggcgtcgctggccaccgagtcgtggctgtcggcggcctccttc
caggagacgaccagggtgctgacggacgcggcgatccacgccaagtccgactcgctgctg
ggcctgaaggagaacgtcatcatcggtaagctcatcccggccggtaccggcatgccgcag
taccgcaacatccgggtcgagccgaccgaggaggccaaggccgccatgtacaccgtcggc
gggtacgacggctcggccgccgactacaccttcggcacgggcagcggcgaggccgtcccg
ctggaggagtacgacttcggccagtacaaccgttaa
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