Nonomuraea gerenzanensis: LCN96_11435
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Entry
LCN96_11435 CDS
T07782
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCN96_11435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngn03019
]
LCN96_11435
Messenger RNA biogenesis [BR:
ngn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCN96_11435
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UBU15599
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All DBs
Position
2365858..2367543
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AA seq
561 aa
AA seq
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MSHPHPELGPPPTLPEGGLRIVALGGLGEIGRNMAVFEYDGRLLVVDCGVLFPEPDQPGV
DLILPDFEYIRDRLDDVEAVVLTHAHEDHIGAVPYLLRERRNIPLIGSRLTLALIEAKLT
EHRIQPTKVEVVEGERHTFGPFDCEFLAVNHSIPDALAVAIRTPAGIVLHTGDFRMDQLP
SDGRLTDLGGFARLGTEGVDLLMSDSTNAEVPGFVTSEREIGPVIDDVIRTSEQRVIVAS
FASHVHRIQQVMDAAAKHGRKVALVGRSMVRNMGVARDLGYLKVPPDLMVDSRDIEEWPP
QDVVLICTGSQGEPMAALSRMANRDHPIRIAEGDTVLLASSLVPGNETAVNKVINGLTRW
GARVVHKGNAKVHVSGHAAAGELLYVLNLTRPSNFMPVHGEWRHLRAHAKLAALTGVPED
HIVIAEDGVVVDLVDGRARIVGAVHAGYVYVDGSSVGEITDTSLKDRRILGDEGFISVVV
VVDSSTGKLTAGPEIHARGSGIDPAQFDEFIPQIQRALEEKAADGVVDMQEIRRVVRRTV
GRWVSDTYRRRPMIIPVVLEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagccatccgcatcctgagcttggccccccgccgacgctgcctgaaggcggcctgcgc
atagtcgcactgggcgggttgggggaaatcggcaggaacatggccgtcttcgaatatgac
ggtcgcctgctggtcgtcgactgcggggtactgttccccgagccggaccagccgggtgtc
gatctcatcctgcctgacttcgaatacattcgggaccggctcgacgacgtcgaagccgtg
gtgctgacgcacgcccacgaagaccacatcggggcggtgccctaccttctgcgcgagcgg
cgcaatatcccgctcatcggctccaggctcacgcttgccctgatcgaggccaagctcacc
gagcacaggatccaaccgaccaaggtcgaggtcgtggagggcgaacggcacacgttcggg
ccgttcgactgcgagttcctcgcggtcaaccactccatcccggacgccttggcggtcgcc
atccggacgccggcgggcatcgtcctgcacaccggtgacttccgcatggaccagctgccg
agcgacggccgcctcaccgacctcggcggcttcgccaggctcggcaccgagggcgtcgac
ctgctgatgtccgactccaccaacgccgaggtgccgggattcgtcaccagcgagcgggag
atcgggccggtcatcgacgacgtgatccgtacctccgagcagcgtgtcatcgtggcgagc
ttcgcctcccacgtgcaccgcatccagcaggtcatggacgccgcggccaagcacggccgc
aaggtggccctcgtcggccgctccatggtgcggaacatgggcgtggcccgagatctcggc
tacctcaaggtgccgccggacctgatggtcgactcgcgcgacatcgaggagtggccgccg
caggacgtggtgctgatctgcaccggctcccagggcgagccgatggcggcgctgtcgagg
atggccaaccgcgaccatccgatccgcatcgccgagggcgacaccgtgctgctggcatcg
tcgctggtgccgggcaacgaaaccgcggtcaacaaggtcatcaacggcctgacccggtgg
ggcgccagggtggtgcacaagggcaacgccaaggtgcacgtctcggggcacgcggccgcg
ggtgagctcctgtacgtgctcaacctgacgcgtccctcgaacttcatgcccgtgcacggc
gaatggcggcaccttcgggcccacgccaagctggccgccctcaccggcgtgcccgaggac
cacatagtcatcgccgaggacggcgtggtggtggacctggtcgacggtcgcgctcggatc
gtcggtgcggttcacgccggctatgtctacgtcgacggctcgtcggtgggcgagatcacc
gacacctctctcaaggaccgcaggatccttggggatgaggggttcatctccgtggtcgtc
gtggtcgactcgagcacgggcaagctcaccgccggaccggagattcacgcccgcggatcc
ggcatcgatcctgcccagttcgacgagttcatcccgcagatccagcgtgccctcgaggag
aaggccgcggacggtgtggtggacatgcaggagatccgccgggtcgtacgtcgcacggtg
gggcgctgggtgagtgacacctaccgccgccggccgatgatcatcccggtggtgctcgag
gtctga
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