Nonomuraea gerenzanensis: LCN96_14720
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Entry
LCN96_14720 CDS
T07782
Name
(GenBank) right-handed parallel beta-helix repeat-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn00040
Pentose and glucuronate interconversions
ngn01100
Metabolic pathways
ngn02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LCN96_14720
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LCN96_14720
Enzymes [BR:
ngn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LCN96_14720
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Pect-lyase_RHGA_epim
Glyco_hydro_28
Motif
Other DBs
NCBI-ProteinID:
UBU16214
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All DBs
Position
complement(3094583..3095530)
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AA seq
315 aa
AA seq
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MSTARRVLTLVTSLAAAAAGLTAATAAPAAADTPLVGWATQGGGTTGGGSAATTTVSSAS
ALTSALSSGSAAVIRVSGTISCSGMLRVASNKTVIGNSGATISGCGFNVSQASNVIIRNL
TFRNWGDDGINVQYSTRVYIDHNTFSNGGDGALDIKRSSDYITVSWNRFFDHDKTMLLGH
SDSNASEDRGRLRVTYHHNWFDGTNQRHPRVRFGNPVHVFNNYYGSVGSYGVASTMEGGV
LVEGNYFENTDDPFHLGEGSSPAGTLVARNNHFVNSGSGQSGGSVRSIPYSYSLDSASSV
KSIVTAGAGAGRISL
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagcacgacgtgtcctcacgctcgtcaccagcctggccgccgcggcggcgggg
ctcacggcggcgaccgcggcgccggccgcggccgacaccccgctggtcggctgggccacg
cagggcggcggcaccaccggcggcggcagcgcggccaccacgaccgtctcctccgcctcc
gcgctgacgagcgccctgtcgtccggctccgccgccgtgatcagggtctccggcaccatc
tcctgctccggcatgctccgcgtcgcctcgaacaagaccgtcatcggcaactcgggcgcg
accatctccggatgcggcttcaacgtctctcaggcgtcgaacgtcatcatccgcaacctg
accttcaggaactggggcgacgacggcatcaacgtccagtactccacccgcgtctacatc
gaccacaacaccttcagcaacggcggcgacggcgccctggacatcaagcggtccagcgac
tacatcacggtgtcctggaacaggttcttcgaccacgacaagaccatgctgctgggccac
agcgacagcaacgcctccgaggaccgggggcgcctgcgcgtgacgtaccaccacaactgg
ttcgacggcaccaaccagcgccacccgcgcgtgcggttcggcaacccggtgcacgtgttc
aacaactactacggcagcgtcggcagctacggcgtcgcctccaccatggagggcggcgtg
ctggtcgagggcaactacttcgagaacaccgacgacccgttccacctgggtgagggcagc
tcccccgccggcaccctggtggcccgcaacaaccacttcgtcaactcgggcagcggtcag
agcggcggcagtgtccggtcgatcccgtactcgtactcgctcgacagcgcctccagcgtc
aagtcgatcgtgacggcgggcgcgggcgcgggccgtatctccctctag
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