Nonomuraea gerenzanensis: LCN96_18500
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Entry
LCN96_18500 CDS
T07782
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03030
DNA replication
ngn03430
Mismatch repair
ngn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCN96_18500 (dnaE)
03430 Mismatch repair
LCN96_18500 (dnaE)
03440 Homologous recombination
LCN96_18500 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngn03032
]
LCN96_18500 (dnaE)
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_18500 (dnaE)
Enzymes [BR:
ngn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LCN96_18500 (dnaE)
DNA replication proteins [BR:
ngn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LCN96_18500 (dnaE)
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LCN96_18500 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
UBU16933
LinkDB
All DBs
Position
3852244..3855771
Genome browser
AA seq
1175 aa
AA seq
DB search
MSSSDSFVHLHVHTEYSMLDGAARLKQMFKQVGDLGMPAIAITDHGNMHGAYDFYKQATG
AGIKPIIGIEAYVAPELRHNKKPVLWGEPHQKRDDVSAGGYYTHMTIWARNKTGLHNLMR
LSSRAYTEGFVRKWARMDAEILAEHADGLMATTGCPSGEVQTRLRLGQYDEALKAAAKYQ
EIFGKDNFFLEIMDHGLDIERRVRDGLTRISKELNIPPLVTNDSHYTYESDASSHDALLC
IQTGKQLSDPDRFRFDGSGYYIKSADEMRAVDSSDLWAEGCRNTLLVAEKVDATGFFEFK
NLMPTYPIPEGMTESEFFRQTVWEGMARRWPEGYDEEHRKQAEYEIGIIEQMGFPSYFLV
VADFIMWAKQNGIPVGPGRGSAAGSLVAYAMGITDLDPLPHGLIFERFLNPERVSMPDVD
IDFDERRRGDVIRYVTEKWGADKVAMIATFGTIKAKAAIKDAGRVLGYPYALGDRVSKAF
PPAVMGKDIPLSGIFDKDHPRYAEAGELRRLYEEDVDVKATMDLGKGLEGLIRQTGVHAA
GVIMSAEVLTDHIPIMRRDSDGAIITQFDYPTCETLGLLKMDFLGLRNLTIMDDCLKMIE
ATTGEKVDLLSLPLDDRKSYELLAKGDTLGVFQLDGGGMRSLLRLMRPDNFEDISAALAL
YRPGPMGANSHTNYALRKNGQQDITPIHPALEEPLRDILDTTYGLIIYQEQVMAIAQKVA
GFTLGAADLLRRAMGKKKKAELDKQYAGFEKGMLDNGYPAEAIKALWDILLPFSDYAFNK
AHTAAYGLIAYWTAYLKANYPAAYMAALLSSVKDDKDKSALYLNECRRMGIKVFPPDVND
SDFDFTPRGTDIRFGLSAIRNVGGNVVDGIISARKEKGRFGDFKDFLRKVPAIVCNKRVI
ESLIKAGAFDSLGHVRKGLVMVHEQAVDAIIDIKKNEAIGQDSLFGAIDGGEDQTFDVQI
PVGEWDKNTLLQFEREMLGLYVSDHPLFGVEHILAAGADCSVAAVQDESRTDGQVVTVGG
ILSGVQRKVTKKGDTWVLTQLEDLAGSIEVMIFPSAYQLCSTLLAEDAIVFVKGRIDKRE
DVAKIIAMEVTAPDLTVEAGGPLLVSLPLTRCTPPVVGRLKEILTTHPGTSEVHLQVHNG
PKTTVMRVDDRLRVTPSPALMGDLKQLLGPACLGA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccagcgactcgttcgtgcacctgcatgttcatacggaatactccatgctggac
ggggcggcccgcctcaagcagatgttcaagcaggtcggcgacctggggatgcccgcgatc
gcgatcaccgaccacggcaacatgcacggcgcctacgacttctacaagcaggccacgggc
gccggcatcaagccgatcatcggcatcgaggcgtacgtcgcgccggagctgcgccacaac
aagaagccggtgctgtggggcgagccgcaccagaagcgggacgacgtctcggcgggtggt
tactacacccacatgacgatctgggcgcgcaacaagacgggcctgcacaacctgatgcgg
ctgtcctcgcgcgcctacaccgagggcttcgtgcgcaagtgggcgcgcatggacgccgag
atcctcgccgagcacgccgacggcctgatggccaccaccggctgcccgtcgggcgaggtg
cagacgaggctgcggctcggccagtacgacgaggcgctcaaggccgccgcgaaatatcag
gagatcttcggcaaggacaacttcttcctggagatcatggaccacggcctcgacatcgag
cgccgcgtccgcgacggcctgaccaggatcagcaaagagctgaacatcccgccgctggtg
accaacgactcgcactacacctacgagtccgacgcctcctcccacgacgccctcctgtgc
atccagaccggcaagcagctgtccgaccccgaccgcttccgcttcgacgggtccggctac
tacatcaagagcgccgacgagatgcgcgcggtcgactcctccgacctgtgggccgagggc
tgccgcaacacgctgctggtggccgagaaggtcgacgcgaccgggttcttcgagttcaag
aacctgatgccgacctaccccatccccgagggcatgacggagagcgagttcttccgccag
accgtctgggagggcatggcccgccgctggcccgagggctacgacgaggagcaccgcaag
caggccgagtacgagatcggcatcatcgagcagatgggcttcccgagctacttcctcgtg
gtcgccgacttcatcatgtgggccaagcagaacggcatcccggtcggccccggccgtggc
tcggccgccggctcgctggtcgcctacgcgatgggcatcaccgacctcgacccgctcccg
cacggcctgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgacgtcgac
atcgacttcgacgagcgcaggcgcggcgacgtgatccgctacgtgaccgagaagtggggc
gccgacaaggtcgccatgatcgccacgttcggcaccatcaaggccaaggccgccatcaag
gacgcgggccgcgtcctgggctacccctacgcgctgggcgaccgggtctccaaggcgttc
ccgcccgccgtgatgggcaaggacatcccgctgtcgggcatcttcgacaaggaccacccg
cgttacgccgaggcgggcgagctgcgccggctctacgaggaagacgtcgacgtcaaggcg
acgatggacctcggcaagggcctggagggcctgatcaggcagaccggcgtgcacgccgcc
ggcgtgatcatgtccgccgaggtgctgaccgaccacatcccgatcatgcgccgcgactcc
gacggcgcgatcatcacgcagttcgactatccgacctgcgagacgctcggcctgctgaag
atggacttcctgggcctgcgcaacctcaccatcatggacgactgcctcaagatgatcgag
gcgaccacgggtgagaaggtcgatctgctctcgctgccgctcgacgaccgcaagtcgtac
gagctgctggccaagggcgacacgctgggcgtcttccagctcgacggcggcggcatgcgc
tcgctgctgcgcctgatgcgccccgacaacttcgaggacatctccgccgccctcgcgctc
taccgccccggcccgatgggtgccaactcgcacaccaactacgccctgcgcaagaacggc
cagcaggacatcacgccgatccacccggcgctggaggagccgctcagggacatcctcgac
acgacctacggcctgatcatctatcaggagcaggtcatggccatcgcccagaaggtggcc
ggcttcaccctgggcgccgccgacctgctgcgccgcgcgatgggcaagaagaagaaggcg
gagctggacaagcagtacgccggcttcgagaagggcatgctcgacaacggctaccccgcc
gaggccatcaaggcgctgtgggacatcctgctgccgttctccgactacgccttcaacaag
gcgcacaccgccgcctacggcctcatcgcttactggaccgcctacctcaaggccaactac
ccggccgcctacatggccgcgctgctgtcgtcggtcaaggacgacaaggacaagtcggcc
ctctacctcaacgagtgccgccgcatgggcatcaaggtcttcccgccggacgtcaacgac
tccgacttcgacttcaccccgcgcggcaccgacatccgcttcggcctgtcggccatccgc
aacgtcggcggcaacgtcgtcgacggcatcatctccgcacgcaaggagaagggccgcttc
ggcgacttcaaggacttcctgcgcaaggtgccggccatcgtctgcaacaagcgcgtgatc
gagtcgctgatcaaggcgggtgcgttcgactcgctcgggcacgtgcgcaagggcctggtc
atggtgcacgagcaggcggtcgacgcgatcatcgacatcaagaagaacgaggccatcggc
caggactccctgttcggcgcgatcgacggcggcgaggaccagaccttcgacgtgcagatc
ccggtgggcgagtgggacaagaacacgctgctgcagttcgagcgggagatgctcggcctg
tacgtgtcggaccacccgctgttcggcgtcgagcacatcctggccgccggggccgactgc
tcggtggcggccgttcaggacgagagccgcaccgacgggcaggtcgtgaccgtgggcggc
atcctcagcggggtgcagcgcaaggtcaccaagaagggcgacacctgggtgctgacccag
ctcgaggacctcgcgggctccatcgaggtgatgatcttcccgtcggcgtaccagctctgc
tcgacgctgctggccgaggacgcgatcgtgttcgtcaaggggcgcatcgacaagcgggag
gacgtcgccaagatcatcgcgatggaggtgacggcgcccgacctcaccgtggaggccggt
gggccgctgctggtgagcctgccgctgacccgctgcacgccgccggtggtcgggcggctg
aaggagatcctcaccacccacccgggcacctccgaggtgcacctccaggtgcacaacggg
cccaagacgacggtgatgcgggtggacgaccggctgcgggtcacgccctcgccggcgctg
atgggcgatctgaagcagctgctcggcccggcctgcctgggcgcctga
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