Nonomuraea gerenzanensis: LCN96_29735
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Entry
LCN96_29735 CDS
T07782
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCN96_29735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngn03000
]
LCN96_29735
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_29735
Enzymes [BR:
ngn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LCN96_29735
Transcription factors [BR:
ngn03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LCN96_29735
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LCN96_29735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_18
Ada_Zn_binding
AlkA_N
HTH_AraC
HTH_Tnp_ISL3
TetR_N
HTH_23
Motif
Other DBs
NCBI-ProteinID:
UBU08573
LinkDB
All DBs
Position
complement(6365410..6366465)
Genome browser
AA seq
351 aa
AA seq
DB search
MNAVGAVVTTGIYCRDDCPGRPLPANVTRFPFAAAAEAAGYRACHRCRPYRHEPADAGDM
PELVCRAVRLIADGALDQATESSLADRLGVSPRHLRRMFLQYAGVSADHLARSRRAHFAR
RLLDDTDLRVSEIAFAAGFGSVRQLNRVLAEVFRATPRELRARRRAADRLRADGGLAIRL
SHDGSLDFADALRRLSARATAAVEMVAGGTYRRTILVDGDPGMIEISRRSATELVMVAHL
PRLDGLIHHVRRARRIFALDGPGEPCGAWDPFEAGVRELVRAGVPDAERAGAVMADLARL
FGAFVPGLAPAGLSRAFPQPGALAEAPLGVLSLPEATAHALRALARGVPSE
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgccgtcggcgccgtcgtgaccaccggcatctactgccgcgacgactgcccgggc
cgccccctgccggcgaacgtcacccgcttcccgttcgccgccgcggcggaggccgccggt
taccgggcctgccatcgctgccgcccgtaccggcacgagccggcggacgcgggcgacatg
ccggagctggtgtgccgggccgtccggctcatcgccgacggggcgctggaccaagcgacg
gagagcagtctggccgaccggctgggcgtgtcgccgcggcacctgcggcgcatgttcctc
cagtacgcgggggtgagcgccgaccacctcgcccgctcccggcgcgcgcacttcgcccgc
cggctgctcgacgacaccgacttgcgggtgtccgagatcgcgttcgccgcggggttcggc
agcgtgcggcagctcaaccgcgttctcgccgaggtgttccgcgccaccccgcgcgagctg
cgggcccggcggcgggccgccgaccggctgcgggcggatggcgggctggccatcaggctt
tcccacgacggatccctcgacttcgcggacgcgctgcggcgcctgtcggcgcgcgcgacg
gcggccgtggagatggtggccggtggcacctaccggcggaccatcctggtggacggtgac
cccggcatgatcgagatcagccggcggtccgcgacggagctggtgatggtcgcccatctg
ccccggctcgacggcctgatccaccatgtccgccgggcgcggcggatcttcgccctggac
gggccgggggagccgtgtggcgcctgggatccgttcgaggcgggcgtgcgcgaactcgtg
cgtgccggggtgccggacgccgagcgggcgggggccgtcatggcggacctcgcccgcctg
ttcggtgcgttcgtgccgggtctcgctccggccgggctcagcagggcgttcccgcagccc
ggcgcgctggcggaagccccgctcggcgtcctgtccctgccggaggccaccgcgcacgcc
ctacgggccttggcacgcggcgttccctccgaatga
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