Nonomuraea gerenzanensis: LCN96_42405
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Entry
LCN96_42405 CDS
T07782
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCN96_42405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngn03019
]
LCN96_42405
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_42405
Enzymes [BR:
ngn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCN96_42405
Messenger RNA biogenesis [BR:
ngn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCN96_42405
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCN96_42405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Pribosyltran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UBU10924
LinkDB
All DBs
Position
complement(9131413..9133527)
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AA seq
704 aa
AA seq
DB search
MIDAPDAAMLREEAEERLRALAGEHARLRDDQWAAIEALVLDRRRVLVVQRTGWGKSAVY
FVATALLRELGEGPTVIVSPLLALMRNQIAAAERAGIRAVTINSANPEAWEEIYGQVAEG
MVDVLLVSPERLNNPDFRDNVLPELAESAGLVVVDEAHCISDWGHDFRPDYRRLSTLFAE
LPPGIPVLATTATANARVTRDVAEQMRLPPELRSEGDDTMVLRGPLERESLHLSVVRLPG
AEQRLAWLAQTLRELPGSGIVYTLTVAAAHEIAGYLREQGLEVAAYSGQTEPAERLAAEE
ALLNNKIKALVATSALGMGFDKPDLGFVVHVGAPQSPVAYYQQVGRAGRGVERAEVILLP
GTEDRDIWAYFASLAFPPEPVVRTVIQTLEERGVMSTPALETAVDLSRSRLEMMLKVLDV
DGAVRRVKGGWEATGEPWAYDTERYQRIAAERRAEQEAMLAYLTTTECREQFLRRHLDDD
TATPCGRCDNCTGRHRSPEIAAQAVETARERLSRPGVEIEARKQWPTGMPDLSGRIKPEL
GAEPGRALGRLTDIGWGNRLRELFAAEDGPMPDDMFAAVIKVLAAWDWRERPVAVVNVPS
ASRPALVRGFAERLAQVGRLTYLGELGYRAGTPGKQFNSAKRVQAIRGTLAMPKDLGAAI
AQCGGPVLLVDDRVDTGWTMTLAAAQIRHAGAPAVLPLALAVTS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgcccccgatgccgcgatgctgcgggaagaggccgaagagcgcctgcgggca
ctcgccggcgagcacgcccggctccgtgacgaccagtgggccgccatcgaggcgctggtg
ctcgaccggcgcagggtcctcgtcgtgcagcggaccgggtggggcaagtcggccgtctac
ttcgtggccaccgccctgctgcgcgagctgggcgagggccccaccgtcatcgtctcgccg
ctgctcgcgctcatgcgcaaccagatcgccgccgccgagcgcgccggcatcagagccgtc
acgatcaactccgccaaccccgaggcgtgggaggagatctacggccaggtcgccgagggc
atggtggacgtgctgctggtcagccccgagcggctgaacaaccccgacttccgcgacaac
gtgctgcccgagctggccgagagcgccgggctggtggtggtcgacgaggcccactgcatc
tccgactggggccacgacttccggcccgactaccgcaggctgtccacgctgttcgcggag
ctgccgcccggcatccccgtgctggccaccaccgccacggccaacgcgcgtgtcacccgc
gacgtggccgagcagatgcggctgccccccgagctgcgttccgagggcgacgacacgatg
gtgctgcgcgggccgctggagcgcgagagcctgcacctgagcgtcgtccggctgcccggc
gccgagcagcgcctggcctggctggcccagacgctgcgcgagctgcccggctccggcatc
gtctacaccctcaccgtcgccgccgcccacgagatcgccggctacctgcgcgagcagggc
ctggaggtggccgcctactccggccagaccgagccggccgagcggctggcggccgaggag
gcgctgctcaacaacaagatcaaggcgctggtggcgacgagcgcgctgggcatgggcttc
gacaagcccgatctgggtttcgtggtgcacgtcggggcgccgcagtcgccggtcgcctac
taccagcaggtcggccgggccgggcgcggcgtcgagcgggccgaggtcatcctgctgccc
ggcaccgaggaccgcgacatctgggcgtacttcgcctcgctggccttcccgcccgagccc
gtcgtgcgcaccgtgatccagacgctggaggaacggggcgtcatgtccacccccgccctg
gagaccgccgtcgacctgagccgcagccgcctggagatgatgctcaaggtcctcgacgtg
gacggcgccgtccgccgggtcaagggcggttgggaggccaccggcgagccgtgggcctac
gacaccgagcgctaccagcgcatcgccgccgagcgccgggccgagcaggaggccatgctg
gcctacctgaccacgaccgagtgccgcgagcagttcctgcgcaggcacctcgacgacgac
accgccacgccgtgcgggcgctgcgacaactgcacggggcggcaccgctcaccggagatc
gccgcgcaggccgtcgagaccgcccgcgagcggctgagcaggcccggcgtcgagatcgag
gcccgcaagcagtggccgaccggcatgcccgacctgtccgggcggatcaagcccgagctg
ggcgccgagcccggcagggcgctcgggcggctgaccgacatcgggtggggcaaccggctg
cgggagctgttcgcggcggaggacgggccgatgccggacgacatgttcgcggccgtgatc
aaggtgctggccgcctgggactggcgcgagcggccggtcgccgtggtcaacgtgccgtcc
gcgtcgcggcccgcgctggtgcgcggcttcgccgagcggctggcccaggtcgggcggctg
acctacctgggggagctgggctaccgcgccggtacgccgggcaagcagttcaacagcgcc
aagcgggtgcaggcgatcaggggcaccctggccatgcccaaggacctgggcgccgccatc
gcccagtgcggcgggcccgtgctgctggtcgacgaccgcgtggacaccggctggacgatg
acgctcgccgccgcccagatccgccacgcgggcgccccggccgtcctgcccctggccctg
gccgtcacgagctga
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