Nonomuraea gerenzanensis: LCN96_52530
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Entry
LCN96_52530 CDS
T07782
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ngn
Nonomuraea gerenzanensis
Pathway
ngn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LCN96_52530
09124 Replication and repair
03420 Nucleotide excision repair
LCN96_52530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngn03021
]
LCN96_52530
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_52530
Enzymes [BR:
ngn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCN96_52530
Transcription machinery [BR:
ngn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LCN96_52530
DNA repair and recombination proteins [BR:
ngn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LCN96_52530
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UBU12802
LinkDB
All DBs
Position
11284007..11285653
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AA seq
548 aa
AA seq
DB search
MSDGPLIVQSDKTLLLEVDHERADACRKAIAPFAELERAPEHVHTYRVTPLALWNARAAG
HDAEQVIDALISYSRYPVPHALLVDVAETMARYGRLRLEKDPVHGLILTSTDRAVLEEVL
RSKKIQPMLGERVGADTVIVHPSDRGNVKQALLKLGWPAEDLAGYVDGEAHPITLREDGW
SLRPYQREAAEAFWNGGSGVVVLPCGAGKTIVGAAAMAHAKATTLIMVTNTVSAHQWKTE
LLKRTSLTEDEIGEYSGNKKEIRPVTIATYQVMTTRRKGVYSHLELFDARDWGLIVYDEV
HLLPAPIFRMTADLQARRRVGLTATLVREDGREGDVFSLIGPKRYDAPWKEMENQGWIAP
ADCVEVRVTLTDEERLAYAMAESEERYRFCATTPSKTHVTEALVRRHLGEQVLVIGQYID
QLDELGEHLNAPVIKGETRVKERERLYQAFRDKEIQVLVVSKVANFSIDLPEATVAIQVS
GTFGSRQEEAQRLGRVLRPKSDGGGARFYTVVSRDTVDQEFAAHRQRFLAEQGYAYQIID
ADDVLGGV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatggaccgctgatcgtccagtcggacaagacgctgctgctcgaggtcgaccac
gagcgggccgacgcctgtcgtaaggcgatcgcgccgttcgccgagctcgagcgcgctccc
gaacacgtgcacacctaccgcgtcaccccgctggccctgtggaacgcccgcgccgccggc
cacgacgccgagcaggtcatcgacgccctcatcagctacagccgctacccggtgccgcac
gcgctgctggtggacgtggccgagacgatggcccgctacgggcggctgcggctggagaag
gacccggtccacgggctcatcctgacctccaccgaccgggccgtgctcgaagaggtgctg
cgctcgaagaagatccagccgatgctgggcgagcgggtcggtgccgacacggtcatcgtg
cacccgagcgaccggggcaacgtcaagcaggccctgctcaagctgggctggcccgccgag
gacctggcagggtacgtcgacggcgaggcgcacccgatcacgctgcgggaggacggctgg
tcgctgcggccctaccagcgcgaggccgccgaggcgttctggaacggcggctccggcgtg
gtcgtgctgccgtgcggcgccggcaagacgatcgtcggcgcggccgccatggcgcacgcc
aaggccaccacgctcatcatggtcacgaacacggtctcggcccaccagtggaagaccgag
ctgctcaagcgcacctcgctgaccgaggacgagatcggcgagtactccggcaacaagaag
gagatccgcccggtcaccatcgccacctaccaggtgatgaccacccggcgcaaaggcgtc
tacagccacctggagctgttcgacgcccgcgactggggcctgatcgtctacgacgaggtg
cacctgctgcccgcgccgatcttccggatgaccgccgaccttcaggcccgcaggcgggtc
gggctgaccgcgaccctggtgcgcgaggacgggcgcgagggcgacgtgttctcgctgatc
ggccccaagcgctacgacgcgccctggaaggagatggagaaccagggctggatcgcgccg
gccgactgtgtcgaggtgcgcgtgacgctgacggacgaggagcggctggcgtacgcgatg
gccgagtcggaggagcgctaccgcttctgcgccaccacgccgtccaagacgcacgtcacc
gaggcgctggtccgccgccatctgggcgagcaggtgctggtcatcggccagtacatcgac
cagctcgacgagctcggcgagcacctcaacgccccggtcatcaagggcgagaccagggtg
aaggagcgtgagcggctctaccaggccttccgcgacaaggagatccaggtgctggtggtg
tcgaaggtggccaacttctccatcgacctgccggaggcgacggtcgcgatccaggtgtcg
ggcacgttcggctcgcgccaggaggaggcgcagcggctcggacgggtgctgcggcccaag
tccgacggcgggggcgcgcggttctacacagtggtcagccgcgacacggtggatcaggag
ttcgccgcgcaccggcagcggttcctggccgagcaggggtacgcctaccagatcatcgac
gccgacgacgtgctgggcggcgtctga
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