Nonomuraea gerenzanensis: LCN96_55290
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Entry
LCN96_55290 CDS
T07782
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ngn
Nonomuraea gerenzanensis
Brite
KEGG Orthology (KO) [BR:
ngn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngn03032
]
LCN96_55290 (topA)
03400 DNA repair and recombination proteins [BR:
ngn03400
]
LCN96_55290 (topA)
Enzymes [BR:
ngn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LCN96_55290 (topA)
DNA replication proteins [BR:
ngn03032
]
Prokaryotic type
DNA Topoisomerases
LCN96_55290 (topA)
DNA repair and recombination proteins [BR:
ngn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LCN96_55290 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
TarS_C2
Motif
Other DBs
NCBI-ProteinID:
UBU13308
LinkDB
All DBs
Position
complement(11852926..11855631)
Genome browser
AA seq
901 aa
AA seq
DB search
MPAKNGSAGGTRLVIVESPAKAKTIAGYLGRGYIVESSIGHIRDLPERADDIPEKFKGAP
WARLGVNVEHGFEPLYVVNHDKRSQVAKLRQLLKDADELYLATDEDREGEAIAWHLREVL
KPKVPVHRMVFHEITPQAIRDAVANPRDLNLRLVDAQETRRILDRLYGYEVSPVLWKKVK
PKLSAGRVQSVATRLVVERERERIAFTPAHYWDLQALFDTNKPEERPRDFTATLTGVDGK
RVAQGRDFASTGQLKSGADVLHLTEAAAGELAGRLQGVSFAVKSVERKPYTRKPYAPFRT
TTLQQEASRKLGFSAKYTMQVAQRLYENGFITYMRTDSITLSETAVAAARSQAIKLYGAS
YVPDKPRVYASKVKSAQEAHEAIRPSGEEFRTPGETGLSGDMFRLYELIWQRTVSSQMKD
AVGESITVKVGGRSSAGENVEFSASGRTITFYGFLKAYVEGADDPSTDRDDSEKRLPNLA
EGDALSVTRLDVAGHSTKPPARYTEASLVKELEDREIGRPSTYASIIGTILDRGYVFKKG
TALVPSFLAFAVVNLLEQHFGNLVDYDFTAEMEKVLDDIANDRAERVPELQRFYYGADGD
EGLKEMVTDLGDIDAKEISSFPVKGTDIVLRVGRYGPYLDRDGARVNVPEDMTPDELTAE
KAEELFSRPTGDRQLGQDPVTGHMIVAKDGRYGPYVTEVLPEPAADEDAPKRRTKKADAP
KPRTSSLFKSMSLDTITLDDALKLLSIPRVVGELEGQEVVAHNGKFGPYLKKGTDSRSLA
SEEALLTVTIEQAKELFAQPKQRGRGRAAAAAPLRELGDDPNSKKPVVVKEGRFGPYVTD
GETNASLRKGDTVEDITIERAAELLAERRERAPAPKKTTTKSTTRKAPAKKAPAKKPATK
S
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
gtgccagccaagaacggcagcgccggcggaacacgcctggtgatcgtcgagtcgccggcc
aaggcgaagaccatcgccgggtacctcgggcgcggctacatcgtcgaatcgagcatcggt
cacatccgcgacctgccggagcgggccgacgacatccccgagaagttcaagggcgcgcca
tgggcccgcctcggggtgaacgtcgagcacgggttcgagccgctgtacgtcgtcaaccac
gacaaacgctcgcaggtcgccaagctgcggcagctgctcaaggacgccgacgagctctac
ctcgccaccgacgaggaccgcgagggcgaggccatcgcctggcacctgcgcgaggtgctc
aagcccaaggtgcccgtgcaccgcatggtgttccacgagatcaccccgcaggcgatccga
gacgccgtggccaacccgcgcgacctcaacctccgcctggtggacgcccaggagacgcgg
cgcatcctcgaccggctctacggctacgaggtcagccccgtcctgtggaagaaggtcaag
ccgaagctgtcggccggccgggtgcagtcggtggcgacgcggctggtggtggagcgcgag
cgggagcgcatcgcgttcacccccgcccactactgggacctgcaggcgctgttcgacacg
aacaagccggaggagcgcccgcgcgacttcaccgccacgctgaccggggtcgacggcaag
cgggtggcgcaggggcgcgacttcgccagcaccgggcagctcaagagcggcgccgacgtg
ctgcacctgacggaggccgccgcgggcgagctggcagggcggctccagggggtctcgttc
gcggtcaagtcggtcgagcgcaagccgtacacgcgtaagccgtacgcgccgttccggacg
accacattgcagcaggaggccagccggaagctgggcttctccgccaagtacacgatgcag
gtcgcgcagcggctgtatgagaacgggttcatcacctacatgcgtaccgacagcatcacg
ctgtcggagacggcggtggcggccgcgcggtcgcaggcgatcaagctgtacggcgcctcg
tacgtgcccgacaagccgcgcgtctacgccagcaaggtcaagagtgcgcaggaggcgcac
gaggcgatcaggccgtcgggcgaggagttccgcacgccgggcgagaccgggctgtcgggc
gacatgttccggctgtacgagctgatctggcagcgcaccgtgtcgtcccagatgaaggac
gcggtcggcgagtcgatcacggtgaaggtgggcggcaggtcgtcggccggcgagaacgtc
gagttcagcgcgtccggtcgcacgatcacgttctacggcttcctgaaggcgtacgtggag
ggggccgacgacccctcgaccgaccgcgacgactccgagaagcggctgccgaacctggcg
gagggcgacgcgctgagcgtgacgcggctcgacgtggccggccactcgaccaagccgccg
gcgcgctacaccgaggcgtcgctggtcaaggagctggaggaccgggagatcggccggccc
tcgacgtacgcctcgatcatcggcaccatcctcgaccgcggttacgtgttcaagaagggc
acggcgctggtgccgtcgttcctggcgttcgccgtggtcaacctgctggagcagcatttc
gggaacctggtcgactacgacttcacggccgagatggagaaggtgctcgacgacatcgcc
aacgaccgggcggagcgggtgccggagctgcagcgcttctactacggcgccgacggcgac
gagggtctcaaggagatggtcaccgacctgggtgacatcgacgccaaggagatcagctcg
ttcccggtcaagggcaccgacatcgtgctgcgggtcggtcggtacgggccgtacctcgac
agggacggcgcgcgcgtcaacgtgcccgaggacatgacgcccgacgagctgacggcggag
aaggccgaggagctgttctcgcggccgaccggtgaccggcagctcggtcaggacccggtg
acggggcacatgatcgtggccaaggacgggcgctacgggccgtacgtgacggaggtcctg
cctgagccggccgccgacgaggacgccccgaagcggcggacgaagaaggccgacgcgccc
aagccgcgcaccagctcgctgttcaagtcgatgtcgctggacacgatcacgctggacgac
gcactcaagctgctgtcgatcccgcgggtcgtgggtgagctggagggccaggaggtcgtc
gcgcacaacgggaagttcggcccgtacctgaagaagggcaccgactcccgctcgctggcc
tcggaggaggcgctgctgacggtcacgatcgagcaggccaaggagctgttcgcgcagccc
aagcagcgcgggcggggccgggcggcggctgccgcgccgctgcgcgagctgggcgacgac
cccaactccaagaagccggtcgtggtcaaggaggggcgtttcgggccttacgtgaccgac
ggcgagacgaacgcgtcgctgcgcaagggtgacacggtcgaggacatcacgatcgagcgg
gcggcggagctgctggccgagcggcgtgagcgggcgccggcgcccaagaagacgacgacg
aagagcaccacgaggaaggcgcctgccaagaaggctccggcgaagaaacctgcgacgaag
tcctga
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