Nocardia gipuzkoensis: LTT66_08335
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Entry
LTT66_08335 CDS
T07945
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LTT66_08335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngp03021
]
LTT66_08335
03400 DNA repair and recombination proteins [BR:
ngp03400
]
LTT66_08335
Enzymes [BR:
ngp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LTT66_08335
Transcription machinery [BR:
ngp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LTT66_08335
DNA repair and recombination proteins [BR:
ngp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LTT66_08335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UGT70159
LinkDB
All DBs
Position
complement(1843414..1847367)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVAVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLEEIWNTFTKLAPKQLIVDEVL
YRELVDRYGEYFTGAMGAESIQKLMESFDIEAEAESLRETIRSGKGQKKLRALKRLKVVA
AFQSNGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGSYQ
PATKDAPEQGVYSSPAEAQMAVDRGELTVRSLIKVRLTDQRPPKDVEAELFPEGWRRGDA
WTTETTLGRVLFNELLPVDYAFINEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKAEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVPI
AEKQLDGSIIRDAHVETSTYARTLAADAVDAQGNVIVAKGADLGDPALEALLEAGITEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRIMGPRQVQVHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFEAANRRVVAEGNEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGQTTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctcgccaccgccgacgacatc
cgtcagtggtcctacggcgaggtgaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgactcgcgccaaggtgcgccgcgagcgcatgggccacatcgaactggccgctccg
gtcacccacatctggtacttcaagggcgtgccctcgcgcctgggctacctgctcgacctg
gcgccgaaggatctggaaaagatcatctacttcgccgcctacgtgatcgtggcggtggac
gaggaactgcggcacaacgagctgtccacgctcgaggccgagatggaggtcgagaagaag
gcggtcgccgaccagcgtgacgccgacctcgaggcccgcgcccagaagctcgaggccgac
ctggccgagctggaggccgaaggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgggagatgcgccagctccgcgaccgcgcccagcgtgagctggaccggctggag
gagatctggaacaccttcaccaagcttgcccccaagcagctcatcgtcgacgaggtgctc
taccgcgagctggtcgaccgctacggcgagtacttcaccggcgcgatgggcgcggagtcc
atccagaagctgatggagagcttcgacatcgaggccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagaagaagctgcgcgcgctcaagcggctcaaggtcgtcgcg
gcgttccagtccaacggcaactcgccgatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggttcagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcc
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctcaag
tcgctgtcggatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcggatggtggagcggcagcgg
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgaacacccggtgctgctcaaccgt
gcgcccaccctgcaccgcctcggtatccaggccttcgagccgcagctggtggaaggtaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcctcgggccggccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgacccgcctggaagagggcgcgaagggttcctaccag
ccggccaccaaggacgctccggagcagggcgtgtactcctcgcccgccgaggcgcagatg
gcggtggaccgcggtgagctcaccgtgcgctcgctgatcaaggtccggttgaccgaccag
cgcccgccgaaggacgtcgaggcggagctgttcccggagggctggcgccgcggcgacgcg
tggaccaccgagaccacgctgggccgggtgctgttcaacgagctgctgcccgtcgactac
gcgttcatcaacgagcagatgccgaagaagcgccaggcgacgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggcgtgacggtctccatgtccgacgtgctcgtgccgccggag
aaggccgagatcatggagcgctacgaggcgcagtcggatcagatcgagaagaagtaccag
cgtggtgcgctcgatcaccaggagcgcaacaacgccctggtcaagatctggcaggaggcg
accgaggaggtcggtaaggcgctgcgcgcgcactacccggccgacaacccgatcatcacg
atcgtcgactcgggcgccacgggtaacttcacccagacccgtaccctcgccggtatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcggccgatcaagtcctccttccgt
gagggcctgacggttctggagtacttcatcaacacccacggcgctcgtaagggtctggcc
gacaccgcgctgcgcaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtgcgcgagcacgactgcggcaccgagcgcggcatcgtggtgccgatc
gcggagaagcagctcgacggctcgatcatccgcgacgcgcacgtggagacctccacctac
gcgcgcacgctcgcggccgacgcggtcgacgcgcagggcaacgtcatcgtggcgaagggc
gccgacctcggcgatccggcgctggaggcgctgctggaggccggtatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggcaccggtgtgtgcgcgacctgctacggccgc
tcgatggcgaccggcaagctggtcgacatcggtgaggccgtcggtatcgtcgccgcgcag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcg
ggtgacgacatcaccggcggtctgccccgcgtgcaggagctgttcgaggcgcgcgtgccg
aagggcaaggcgcccatcgccgaggtctccggtcgcgtgcggctggaggacgacgatcgc
ttctacaagatcaccatcatcccggatgacggtggcgaagaggttgtctacgacaagctc
tcgaagcggcagcgtctgcgggtgttcaagcacgacgacggcaccgagcgtctgctctcc
gacggtgaccacgtcgaggtcggccagcagctgctggaaggcgcggcggatccgcacgag
gtgctgcgcatcatgggcccccgtcaggttcaggtccacctggtccacgaggtccaggag
gtctaccgctcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgtgcgccag
atgctgcgtcgcgtgacgatcatcgactcgggcgcgacggagttcctgcccggctcgctc
accgagcgcgccgagttcgaggccgccaaccgtcgcgtcgtcgccgagggcaacgagccc
gcggcaggtcgtccggtgctgatgggtatcaccaaggcgtcgctggccaccgactcgtgg
ctgtcggcggcgtccttccaggagaccacccgagttctgacggacgcggcgatcaactgc
cgctccgacaagctcatcggcctcaaggagaacgtgatcatcggtaagctgatcccggcc
ggtaccggtatcaaccgctaccggaacatccaggtgcagccgaccgaagaagcccgtgcc
gccgcgtacgcggtgccgtcctacgacgacacctactacagcccggacagcttcggtcag
accacgggcgccgcggttccgctcgacgactacggcttcagcgactaccgctga
DBGET
integrated database retrieval system
