Nocardia gipuzkoensis: LTT66_17140
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Entry
LTT66_17140 CDS
T07945
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LTT66_17140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngp03400
]
LTT66_17140
Enzymes [BR:
ngp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LTT66_17140
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LTT66_17140
DNA repair and recombination proteins [BR:
ngp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LTT66_17140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
RNHCP
TMEM106_N
DUF7129
Motif
Other DBs
NCBI-ProteinID:
UGT71719
LinkDB
All DBs
Position
3882183..3883052
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AA seq
289 aa
AA seq
DB search
MPELPEVEALAQFLREHAVGAVVGRVDVAALSAVKTFEPPVTALSGRDVTGAGRWGKFLG
MECDGLWLVTHLSRGGWLRWIDEPSPTPPKPGGKSPLALRVHFFTPEGATPAFDLTEAGT
KKRLAVYVVEDPKAVPGIARLGPDALEVTQAQFADLLDGTSQRIKTALVDQTLLAGVGNA
YSDEILHTARISPFANTKTLPADKVAELYTAMRAVLTDAVGRSVGQDAARLKGEKRSGMR
VHARTGLACPVCGDTVREVAYAERSFQYCPTCQTGGKILADRRMSRLLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
gtgccagagctaccggaagtggaggcgttggcgcagttcctgcgggagcatgcggtcggc
gccgtggtcggccgcgtcgacgtggccgcgctgagcgccgtcaagaccttcgagcctccc
gtgacggcgctgtccggccgagacgtcaccggtgcggggcgctggggcaaattcctcggg
atggaatgcgatgggctgtggctcgtcacgcatctgtcgcgcggcggatggctgcgctgg
atcgacgagccgagcccgacgccgcccaaaccgggcggcaagagcccgctggcactgcgg
gtgcatttcttcacgccggaaggcgccacgcccgcgttcgatctgaccgaggcgggcacc
aagaagcggctggcggtgtacgtcgtggaggacccgaaggcggtgcccggcatcgcccgg
ctgggtcccgacgcgctggaagtgacccaggcgcagttcgccgacctcctggacggcact
tcgcagcggatcaaaaccgcgctggtcgaccagacgctgctggcgggcgtcggcaacgcg
tattccgacgagatcctgcacaccgcgcggatctcgccgttcgcgaacacgaagaccctg
cccgccgacaaggtggccgagctctacaccgccatgcgtgccgtgctcaccgacgcggta
ggccgctcggtcggtcaggacgccgcccgcctcaagggcgagaagcgctcgggcatgcgg
gtgcacgcccggaccgggctggcctgcccggtctgcggcgacacggtccgcgaggtcgcc
tacgccgagcggtcgttccagtactgccccacctgtcagaccggcggcaagatcctcgcg
gaccggcggatgtcgcggttgctgaagtag
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