Nocardia gipuzkoensis: LTT66_17235
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Entry
LTT66_17235 CDS
T07945
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03420
Nucleotide excision repair
ngp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LTT66_17235 (pcrA)
03430 Mismatch repair
LTT66_17235 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngp03400
]
LTT66_17235 (pcrA)
Enzymes [BR:
ngp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LTT66_17235 (pcrA)
DNA repair and recombination proteins [BR:
ngp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LTT66_17235 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
LTT66_17235 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
UGT71736
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All DBs
Position
3902411..3904993
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AA seq
860 aa
AA seq
DB search
MDITVAPKTQAGRIAHPDPTPKPPFPGGDAAEGSRPAAVPEAPPTDAERERQRVEREQRR
AEEAERLLDGLNPQQRAAVVHTGSPLLIVAGAGSGKTAVLTRRIAYLLAARGVTPGQVLA
ITFTNKAAAEMRERVTGLVGPRANTMWVSTFHSSCVRILRTQAALLPGLNSNFSIYDADD
SRRLLTMISRDLDIDTKKYSARLLATAISNLKNELIDPARATADAESDDTELPGLVARVY
TEYQRRLRSANALDFDDLIGETVALLQNHPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVR
ELVGHHVDEEAEDRVPPSELCVVGDADQSIYAFRGATIRNIEEFERDFPDAETILLEQNY
RSTQHILSAANAVISRNENRRDKKLWTDSGEGDLITGYVADNEHDEASFVAREIDRLVDQ
GEANYGDVAVFYRTNNNSRALEEIFIRMGLPYKVVGGVRFYERKEVRDIVAYLRVLENPE
DAVSMRRILNTPRRGIGDRAEACVAVHAEQRGIGFAAALRDAAEGKVALLNTRAQRAIAN
FLDLLDDVRAAGERAESDFPDVGNVVEAVLERTGYRAELEASDDPQDGARLDNLNELVSV
AREFSSEAHNNAEAARQEGLLPEVGEGEPDPGSLAAFLERVSLVADTDQIPDEGSGVVTM
MTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPTELAEERRLAYVGITRARQRLYLTRAV
VRSGWGQPVSNPESRFLQEIPGHLIDWRRLEPAGSPGTRGIRRRGDDDGLERDWTRGDGW
SQQRPGLRDRGPRRPAPGGATRNNTNLVLAVGDRVSDDKYGLGRVIAAEGFGPLATVTID
FGTAGKIRLIPQYSRTLVKL
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggacatcacggtggctcccaagacgcaggccggtcggatcgcgcacccggacccgaca
ccgaaaccgccgttccccggcggtgacgcagcggaggggtcgcggcctgccgccgtgccc
gaggcgccgcccacggacgccgagcgcgagcggcagcgcgtcgagcgcgaacagcggcgc
gccgaggaagccgagcgcctgctcgacggcctgaacccgcagcagcgggcggcggtggtg
cacaccggatcccccttgctcatcgtggcgggcgcgggctcgggcaaaaccgccgtgctc
acccgtcgcatcgcctatctgctggccgcccgcggcgtcaccccgggccaagtgctcgcc
atcacgttcaccaacaaggccgccgcggagatgcgggagcgggtgacggggctggtcgga
ccgcgtgcgaacaccatgtgggtgtcgacgttccactccagttgcgtccgcatcctgcgt
acccaggcggcgctgctgcccggcctgaactcgaacttctccatctacgacgcggacgat
tcgcggcgcctgctcaccatgatcagccgcgacctggacatcgacaccaagaagtactcg
gcgcgcctgctcgccaccgcgatctcgaacctgaagaacgagctcatcgatccggcccgc
gccaccgcggacgcggaatccgacgacacggagctgcccggcctggtggccagggtctac
accgagtatcagcgcaggctgcgctcggcgaacgcgctggacttcgacgacctgatcggc
gagacggtggcgctgctgcagaaccatccgcaggtcgccgagtactaccgccgccggttc
cggcacgtgctggtggacgagtaccaggacaccaaccacgcgcagtacgtcctggtccgc
gagctggtcggccaccacgtggacgaggaggccgaggatcgggtcccgccgagcgaactg
tgcgtggtgggtgacgccgaccagtccatctacgccttccgtggcgcgacgatccgcaat
atcgaggagttcgagcgcgacttccccgacgccgaaaccattctgctggagcagaactat
cgctccacccagcacatcctctccgccgccaacgcggtgatctcgcgcaacgagaaccgg
cgcgacaagaagctgtggaccgattccggcgagggcgacctgatcaccggctatgtcgcc
gacaacgagcacgacgaggcgtcgttcgtggcgcgcgagatcgaccggctggtcgaccag
ggcgaggccaactacggcgatgtcgcggtgttctaccgcaccaacaacaactcccgcgcg
ctggaagagatcttcatccggatgggcctgccctacaaggtggtcggcggcgtccgcttc
tacgagcgcaaagaggtgcgcgacatcgtcgcctacctgcgggtgctggagaacccggag
gacgcggtgagcatgcgccgcatcctgaacacgccccgccgcggcatcggcgaccgcgcc
gaagcctgcgtggcggtccatgccgaacagcgcgggatcggtttcgccgccgcgctgcgc
gacgccgccgaaggcaaagtggcgctgctgaacacccgcgcccagcgcgccatcgcgaac
ttcctcgacctgctcgacgacgtccgcgccgcgggtgaacgcgcggaatccgacttcccc
gacgtgggcaacgtggtcgaagcggtgctcgagcgcaccggttatcgcgccgagctggag
gcgtccgacgacccgcaggacggcgcccggctggacaacctcaacgaattggtcagcgtc
gcgcgggagttcagctccgaggcgcacaacaacgcggaggccgcccggcaggaggggctg
ctgcccgaagtcggtgagggcgagccggaccccgggtcgctggcggcgttcctggagcgg
gtctcgctggtggccgacaccgaccagattccggacgagggttccggcgtggtcacgatg
atgacgctgcacacggccaaggggctggagttcccggtggtgttcgtcaccggctgggag
gacgggcagttcccgcacatgcgggcgctcggcgatccgaccgaactggccgaggaacgc
cgcctcgcctacgtcggcatcaccagggcccggcagcggctgtacctgacccgtgccgtg
gtgcgttcgggctggggacagccggtgtcgaacccggaatcgcggtttctgcaagagatc
cccggtcacctcatcgattggcggcggctcgaaccggccggatcgcccggaacgaggggt
atccggcggcgtggcgacgacgacggcctggagcgggactggacgcgcggtgacgggtgg
tcgcagcagcggcccggtttgcgtgatcgtggaccgcgcaggcccgctcccggcggtgcg
acccgcaacaacacgaacttggtactcgccgtgggtgatcgggtcagcgacgacaagtac
ggtctcggccgggtgatcgccgccgagggcttcggcccactggccacggtgaccatcgac
ttcggcaccgcgggcaagatccggttgatcccgcagtacagccggacgttggtcaagctc
tga
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