Nocardia gipuzkoensis: LTT66_17760
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Entry
LTT66_17760 CDS
T07945
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LTT66_17760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngp03400
]
LTT66_17760 (mfd)
Enzymes [BR:
ngp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LTT66_17760 (mfd)
DNA repair and recombination proteins [BR:
ngp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LTT66_17760 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
LSDAT_prok
MFD_D3
UB2H
DUF3638
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UGT71823
LinkDB
All DBs
Position
4003389..4007000
Genome browser
AA seq
1203 aa
AA seq
DB search
MSTHRPPLAGLAAAAGADTSLRTVAELIGTSSVELVAPSAVRPFVAARVAAARPLVVVTA
TGREADDLTVELEEMLGPTVAQFPSWETLPHERLSPGADTVGRRLEVLRRIAHPADPHFP
APLRVVVTTVRSLMQPMADGLGDIEPIVLRVGAELDFDELLTRLVEFAYTRVDMVGKRGE
FAVRGGILDVFPPTADHPVRVEFWGDEVTELRPFAVADQRSLPEVTVDLVVAPPCRELLL
TPEVRDRAAEVAAANAADAALVEMLEKLAQGIPVEGMEALLPVLRPGQLRLLTEVLPEGT
HVLLCDPEKIRTRAADLVRTGEEFLEASWTAASFGGAAPLGGHGLDLAASAYRPLPEVQA
SADRQGLPWWTLSPLASGAASEVALPVLPGPAARGSDELVATLFASLRAHVITGGRAVVV
VAGHGTAQRIMERLADADVPAAALEQGAEPNDGVVGVLCGSLHDGLVFEDAGLVIVAESD
LTGNRVTAPAEGKRMPAKRRNQVDPLALSAGDMVVHDQHGIGKFVEMIERTVGGARREYL
VIEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIA
GELVQLYAARQAAPGHAFAPDTPWQQEMEDAFAFTETVDQMTAIAEVKADMEKPVPMDRV
VCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGFPITVKGLSR
FTDPAEARAVLEGMADGGVDIVVGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDKQVTAAIRRE
LLRDGQVFYVHNRVASIDKAAKRIRDLVPEARVVVAHGQMNEDALESTVQGFWQREYDVL
VCTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTET
AYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGKPITIEEVKEVRIDLPVDAHIPPDYIASDRLRLEAYRKLAAAQDDSALAQVVD
ELVDRYGPLPVEVGRLVSVAKLRLLAREYEVTEIAVTGTTLKISPLHLPDSKQMRLKRLY
PSAGYRAASGVVQLPLPRVEDSVGAERVRDVVLLQFVADLLLALDGKAQGAVDLTVAAEM
APR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccaccgcccgccgttggcgggactggccgccgcggccggtgccgatacctcg
ctacggaccgtcgcggagctgatcggcacctcatcggtcgagttggtcgcgccgtcggcg
gtgcgcccgttcgtcgcggcgcgggtggcggccgcgcggccgctggtggtggtgacggcg
acggggcgggaggccgacgatctgaccgtcgagctggaggagatgctcggccccacggtc
gcgcagttcccgtcctgggagacgctgccgcacgagcggctctcaccgggcgcggacacg
gtggggcgcaggctggaggtgctgcgccggatcgcgcaccccgccgacccgcatttcccg
gcgccgctgcgcgtcgtggtcaccaccgtccggtcgctgatgcagccgatggcggacggg
ctcggcgacatcgagccgatcgtgctgcgggtcggcgccgagctggacttcgacgaattg
ctcacgcggctggtggaattcgcctacacccgggtcgacatggtgggcaagcgcggcgaa
ttcgcggtgcgcggcggcatcctggacgtgttcccgcccaccgccgaccatccggtgcgg
gtggagttctggggcgacgaggttaccgagctgcggccgttcgccgtcgccgaccagcgc
tccctgcccgaggtgacggtggacctggtcgtcgcgccgccgtgccgggaactgctgctc
accccggaggtgcgcgatcgggcggccgaggtcgccgccgccaacgcggccgacgcggcg
ctggtggagatgctggagaaactggcgcagggtatcccggtcgagggcatggaggcgctg
ttgccggtgctgcggcccgggcaactgcgcctgctcaccgaggtgctgccggagggcacc
cacgtgctgctgtgcgatccggagaagatccgcacccgcgccgccgacctggtgcgcacc
ggcgaggaattcctggaggcctcctggaccgcggcgtcgttcggcggcgccgcaccgctc
ggcgggcacggactcgacctggccgcctccgcctaccgcccgctgccggaggtccaggcc
agcgccgatcggcagggtctgccctggtggaccctgagccccctcgcctccggcgccgcg
tccgaggtcgcgctgccggtgctgcccggcccggccgcgcgcggctccgacgaattggtg
gcgaccctgttcgcctcgctgcgtgcccacgtcatcaccggcggcagggctgtcgtggtc
gtcgcaggtcacggcacggcgcagcgcatcatggaacggctggcggacgcggacgtcccc
gccgcggcgctggagcagggggccgagccgaacgacggcgtggtcggcgtgctgtgcggt
tcgctgcacgacggcctggtgttcgaggacgccggtctggtgatcgtcgccgagtccgac
ctcaccggcaaccgggtcaccgcgcccgccgagggcaagcggatgccggccaagcgccgc
aaccaggtcgacccgctcgcgttgagcgcgggcgacatggtggtgcacgaccagcacggc
atcggcaagttcgtcgagatgatcgagcgcaccgtgggcggcgcccgccgcgagtacctg
gtgatcgagtacgcgccgagcaagcgcggccagcccggcgaccggctgttcgtgccgatg
gagtcgctcgaccagctctcccgctacgtcggcggtgagatgccgagcctgtccaagctc
ggcggctcggactgggccaatacgaaacgcaaggcgcgcaaggcggttcgggagatcgcg
ggcgagctcgtgcagctctacgccgcgcgccaggccgcgccgggccacgccttcgcgccg
gacacgccgtggcagcaggaaatggaggacgcattcgcgttcaccgagaccgtcgaccag
atgaccgccatcgccgaggtgaaggcggacatggagaagccggtcccgatggaccgcgtc
gtctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcc
gtgcaggacggcaagcaggtcgtggtgctggtgccgaccacgctgctcgcgcagcagcac
ctgcagaccttcaccgagcgggtcgcgggcttcccgatcaccgtgaagggcctgtcccgc
ttcaccgatccggccgaggcgcgcgccgtgctggagggaatggccgacggcggcgtggac
atcgtggtcggcacgcaccggctgctgcagaccggtgtgcgctggaaggacctcggcctc
gtggtggtcgacgaggagcagcggttcggtgtggagcacaaggagcacatcaaggcgctg
cgcacgcacgtcgacgtgctcaccatgtcggcgaccccgatcccgcgcaccttggagatg
agcctggccggtatccgcgagatgtcgaccatcctcactccgccggaggaacgccacccg
gtgctcacctatgtgggcgcgtacaacgacaagcaggtcaccgccgcgatccggcgcgag
ttgctgcgcgacggccaggtcttctacgtgcacaatcgggtggcgtcgatcgacaaggcg
gccaagcggattcgcgatctggtgccggaggcgagggtggtggtcgcgcacggccagatg
aacgaggacgcgctggagtccaccgtgcagggcttctggcagcgcgaatacgacgtgctg
gtgtgcaccacgatcatcgagaccggtctggacatctccaacgccaacacgctgatcgtg
gaacgcgccgacgcgctcgggctctcccagctgcaccagctgcgtggccgggtcgggcgc
tccagggaacgcggctacgcctacttcctgtacccgccggagaagccgctcaccgagacg
gcctacgaccggctcgccaccatctcgcagaactccgacctcggcgcgggcatggcggtc
gcgatgaaggacctggagatccgcggcgcgggcaacgtgctcggtgccgagcagtccggg
cacgtcgcgggcgtcgggttcgatctctacgtgcgcctggtcggcgaggcggtcgaggcg
taccgcgccgccgccgacggcaagccgatcaccatcgaggaagtcaaggaggtgcgcatc
gacctgcccgtcgacgcgcacatcccgccggactacatcgccagcgaccggctccgcctg
gaggcctatcgcaaactggccgccgctcaagacgattcggcgctggcgcaggtcgtggac
gagctcgtcgaccgttacgggccactgccggtcgaggtcgggcggctggtctcggtggcc
aagctgcgcctgctcgcccgcgagtacgaggtgaccgaaatcgccgtcaccggaaccact
ttgaagatatccccgctgcatctgccggattccaagcagatgcgcctcaagcggctctac
cccagcgcgggttaccgcgccgcctccggggtggtgcagcttccgttgccccgcgtggag
gacagtgtcggcgccgagcgcgtccgggatgtggtgctgctgcagttcgtggccgatctg
ctgctggcattggacgggaaggcgcagggcgcggtcgatctcaccgtcgccgccgagatg
gctccccgatga
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integrated database retrieval system
