Nocardia gipuzkoensis: LTT66_23930
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Entry
LTT66_23930 CDS
T07945
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ngp
Nocardia gipuzkoensis
Pathway
ngp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTT66_23930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngp03019
]
LTT66_23930
03016 Transfer RNA biogenesis [BR:
ngp03016
]
LTT66_23930
Enzymes [BR:
ngp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LTT66_23930
Messenger RNA biogenesis [BR:
ngp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LTT66_23930
Transfer RNA biogenesis [BR:
ngp03016
]
Prokaryotic type
tRNA degradation factors
LTT66_23930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
S1_RRP5
KH_2
Motif
Other DBs
NCBI-ProteinID:
UGT66328
LinkDB
All DBs
Position
5274536..5276824
Genome browser
AA seq
762 aa
AA seq
DB search
MTETTERKSSAVEVEPGVFESVALIDNGSYGTRTVRFETGRLARQAAGSVVAYLDDENML
LSATTAGKQPKDQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLR
PSFVDGLRNEIQVVVTVLSLDPNDLYDVVAINAASASTQIAGLPFSGPVGGVRVALIPDG
AASQWVAFPTVEQLEGAVFDMVVAGRVVESGDVAIMMVEAEATDKVIELIEGGAQAPTET
VVAEGLEAAKPFIARLCRAQQDLAELASKPTEEFPLFPPYGQDVYEAVEGTAKRELSEAL
GIAGKQEREEKIDEIKLAVLDRLGDDFAGREKELGAAFRSVTKKLVRQRILSDGFRIDGR
GLADIRALSAEVAVVPRAHGSALFERGETQIMGVTTLDMVKMAQQVDSLGPETSKRYMHH
YNFPPFSTGETGRVGSPKRREIGHGALAERALIPVLPSQEEFPYAIRQVSEALSSNGSTS
MGSVCASTLSLLNAGVPLKAPVAGIAMGLVSDTITNDKGEDEVRYVALTDILGAEDAFGD
MDFKVAGTREFVTALQLDTKLDGIPSQVLAGALSQAHDARTTILDVMAEAIATPDEMSPY
APRVTAIKIPVDKIGEVIGPKGKVINQITEDTGANISIEDDGTVFVGATDGPSAQAAIDA
INAIANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVAKVEDVVNV
GDKLRVEIADIDNRGKISLVPVEDNAEESGDDSADAGSAGTE
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaacaactgaacgcaagagctcggccgtcgaggtcgaaccgggcgtattcgaa
tccgtcgcgctgatcgacaacggcagctacggcacccgcaccgtccggttcgagaccgga
cgcctcgcccggcaggccgccggttcggtcgtcgcctacctggacgacgagaacatgctg
ctgtcggccaccaccgcgggcaagcagcccaaggaccagttcgacttcttcccgctgacg
gtcgatgtcgaggagcggatgtacgccgcgggccgcatccccggatcgttcttccgccgt
gagggccgtccctccaccgacgcgatcctgacctgccgcctgatcgaccggccgctgcgt
ccgtcgttcgtcgacggcctgcgcaacgagatccaggtcgtggtcaccgtgctgagcctg
gacccgaacgacctctacgacgtggtggcgatcaacgccgcgtccgcgtccacccagatc
gcgggcctgccgttctccggcccggtcggcggcgtgcgggtcgcgctgatcccggacggg
gctgcgtcgcaatgggtggccttcccgaccgtcgagcagctcgagggcgccgtgttcgac
atggtggtcgcgggccgcgtggtcgagtccggtgacgtcgccatcatgatggtcgaggcc
gaggccaccgacaaggtgatcgagctgatcgagggtggcgcgcaggcgccgaccgagacc
gttgtcgccgagggcctcgaggccgccaagccgttcatcgcccgcctgtgccgcgcgcag
caggatctcgccgagctggcgtcgaagccgaccgaagagttcccgctgttcccgccgtac
ggccaggacgtgtacgaagccgtcgaaggcaccgccaagcgcgagctgagcgaggcgctg
ggcatcgcgggcaagcaggagcgcgaggagaagatcgacgagatcaagctcgccgtgctc
gaccggctcggcgacgacttcgccggacgcgagaaggaactgggcgccgcgttccgctcg
gtcaccaagaagctggtgcgccagcgcatcctgtccgacggcttccgtatcgacggccgc
gggctcgccgatatccgtgcgctgtcggccgaggtcgcggtcgtaccgcgcgcccacggc
tcggcgctgttcgagcggggcgagacccagatcatgggcgtcaccaccctggacatggtg
aagatggcccagcaggtcgactcgctcggcccggagaccagcaagcgctacatgcaccac
tacaacttcccgccgttctccaccggtgagacggggcgagtcggttcgcccaagcgccgc
gagatcggtcacggcgcgctggccgagcgggcgctgatcccggtgctgcccagccaggag
gagttcccatacgccatccggcaggtctcggaggcgctgagctccaatggctccacctcg
atgggctcggtgtgtgcctccaccctgtcgctgctgaacgccggtgtgccgctgaaggcg
ccggtcgccggtatcgcgatgggcctggtgtcggacaccatcaccaacgacaagggcgag
gacgaggtccgctacgtcgcgctgaccgacatcctcggcgccgaggacgccttcggcgac
atggacttcaaggtcgcgggtacccgcgagttcgtcaccgcgctgcagctggacaccaag
ctggacggcatcccctcgcaggtgctggccggtgcgctgagccaggcccacgacgcgcgc
accacgatcctggacgtgatggccgaggccatcgccaccccggacgagatgagcccgtac
gcgccgcgcgtcaccgcgatcaagatcccggtcgacaagatcggtgaggtgatcggcccc
aagggcaaggtgatcaaccagatcaccgaggacaccggcgccaacatctccatcgaggac
gacggcaccgtgttcgtcggtgcgaccgacggcccgtccgcgcaggccgcgatcgacgcg
atcaacgccatcgccaacccgcagctgccgaaggtcggcgagcgcttcctgggcacggtc
gtcaagaccaccgccttcggcgcgttcgtctccctgctgccgggtcgcgacggcttggtg
cacatctccaagctgggtaacggcaagcgcgtggccaaggtcgaggacgtcgtgaacgtc
ggcgacaagctgcgggtggagatcgccgacatcgacaaccgcggcaagatctcgctcgtg
ccggtcgaggacaacgccgaggagtccggcgacgactcggccgatgcgggctcggccggg
accgagtag
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integrated database retrieval system
