KEGG   Naegleria gruberi: NAEGRDRAFT_29162
Entry
NAEGRDRAFT_29162  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K10756  replication factor C subunit 3/5
Organism
ngr  Naegleria gruberi
Pathway
ngr03030  DNA replication
ngr03410  Base excision repair
ngr03420  Nucleotide excision repair
ngr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NAEGRDRAFT_29162
   03410 Base excision repair
    NAEGRDRAFT_29162
   03420 Nucleotide excision repair
    NAEGRDRAFT_29162
   03430 Mismatch repair
    NAEGRDRAFT_29162
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ngr03032]
    NAEGRDRAFT_29162
   03036 Chromosome and associated proteins [BR:ngr03036]
    NAEGRDRAFT_29162
   03400 DNA repair and recombination proteins [BR:ngr03400]
    NAEGRDRAFT_29162
DNA replication proteins [BR:ngr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    NAEGRDRAFT_29162
  DNA Replication Termination Factors
   ELG1-RFC complex
    NAEGRDRAFT_29162
Chromosome and associated proteins [BR:ngr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    NAEGRDRAFT_29162
DNA repair and recombination proteins [BR:ngr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     NAEGRDRAFT_29162
  Check point factors
   HRAD17(Rad24)-RFC complex
    NAEGRDRAFT_29162
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_lid_RFC1 AAA_22 AAA_assoc_2 Mg_chelatase Sigma54_activ_2 AAA_16 Rpr2 DUF3785 ABC_tran TniB DNAX_ATPase_lid T2SSE FtsK_SpoIIIE FtsK_SpoIIIE_N nSTAND6 HBoV_NS1-like_N nSTAND3 AAA_29 DUF815 TsaE
Other DBs
NCBI-GeneID: 8863714
NCBI-ProteinID: XP_002683342
JGI: Naegr1_29162
UniProt: D2UXA6
LinkDB
AA seq 356 aa
MVLWLDKHRPMSLEKMQIHKEVSEQLMNITKSGDFPHLLIHGPSGAGKKTRIQALLREIY
NNKIDKVKLENKDVSVGSDGSKTITVTALSSGYHLEITPSDSGYYDKYVVANMIKEVAET
DSVDFLSTGSSASSHLKVIVLHEVDSLTREAQQALRRIMEKYSKSCRLILCANSTSKIIP
PIRSRCMAVRIPAPSDEEISTVLQFVAKKENIKLVPEITQQICEKCDGNMRRALLMLESA
KVEQYPFTKDQQVKLPGWEKFVEEIAKSIIADQTPQTLLKIRDDFFLLLTNCIAPDIIFK
TLLLKLLDLLDGEQAHQVIELAAKFEHRMKCGSKPIFHLEAFVASVMSLCQSMFSF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atggttctctggttagataaacatcgtccaatgtcattggaaaagatgcaaatccacaaa
gaagtctctgaacaattaatgaatataaccaagagtggagattttcctcatcttttaatt
catggaccatcaggagcaggtaaaaagactagaatacaagcactccttcgtgaaatatat
aacaacaagattgacaaagttaaattagaaaataaggatgtttctgtaggatcggatgga
tcaaagactatcacagtgactgcactttctagtggatatcatttagaaattacaccaagt
gatagtggatattatgataaatatgttgttgctaatatgatcaaggaagtagcagagact
gattctgttgattttctctctactggtagtagtgcttcatcacatttaaaagttattgtt
ttacatgaagttgatagtttaacaagagaagctcaacaagccttgagaagaattatggaa
aagtattcgaaatcatgtcgtttaattttatgtgccaattcaacttcaaagattattcca
ccaattagaagtagatgtatggctgttagaataccagctccttctgatgaagaaatttca
acagttttacaatttgttgccaagaaggaaaatatcaaactcgttccagaaattacacaa
caaatttgtgaaaaatgtgatggtaatatgagaagagctctattaatgctagaaagtgcc
aaagtagaacaatatccattcacaaaagatcaacaagttaaattacctggttgggagaaa
tttgttgaggaaattgctaaatctattattgctgatcaaacaccacaaactcttttgaaa
attagagatgatttcttccttttattaacaaattgtatagctccagatattattttcaag
actttattattgaaattattggatttattagatggtgaacaagcacatcaagttattgaa
ttggctgctaaatttgaacatagaatgaaatgtggttcaaaacctattttccatcttgaa
gcatttgttgcctctgtaatgagtctttgtcaatccatgtttagtttttaa

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