KEGG   Naegleria gruberi: NAEGRDRAFT_29347
Entry
NAEGRDRAFT_29347  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
ngr  Naegleria gruberi
Pathway
ngr03022  Basal transcription factors
ngr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    NAEGRDRAFT_29347
  09124 Replication and repair
   03420 Nucleotide excision repair
    NAEGRDRAFT_29347
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ngr03021]
    NAEGRDRAFT_29347
   03400 DNA repair and recombination proteins [BR:ngr03400]
    NAEGRDRAFT_29347
Enzymes [BR:ngr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NAEGRDRAFT_29347
Transcription machinery [BR:ngr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     NAEGRDRAFT_29347
DNA repair and recombination proteins [BR:ngr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     NAEGRDRAFT_29347
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 Helicase_C DEAD
Other DBs
NCBI-GeneID: 8863602
NCBI-ProteinID: XP_002683056
JGI: Naegr1_29347
UniProt: D2UXM8
LinkDB
AA seq 729 aa
MLNNHLHDQTTGTSSNRLQSEDKKRKKKEKEAKKKKQKYEEILNDLDNEVAKKAQEKLVS
DIFSQKKDVQFDHSNLELKPDHKLRPVWVCSGTDGKFHIFMETFSPIYQQAYDFLVAVAE
PVSRPENLHEYVLTEYSLYAAVSIGMNTEQIIQVLEKLSKVKLSEALINFIRDVTRKYGN
VKLVLQKNRFFVESPHLTIMEKLYEDKIISAAAIVPDPNEFPNVDRSKRFIIRTRSKQNE
LEKFQKQALANTSTVNKGSKIQTEMIRAVNQIGDDEDDDADDDFDISSAVETFYLFEINP
TECIEWKNQFKLWSTIDENRVVVFTSQEKDALPKDDDPLIIITTYTMITHTRKRSGEAKE
VMDYIQSREWGLLILDEVHVVPANMFRHVASVKSHCKLGLTATLLREDNKTDDLYFLIGP
KLYEANWLDLQQKGHLANVQCVEVWCPMTAEFFAEYLTANAKKKTLLYVMNPNKFRACEF
LIRYHEKQGDKIIVFSDNVFALQEYAEKLGVPYIFGNTKQQERVYYLNQFRNTNHYNTIF
ISKVGDTAIDIPEATVIIQISSHFGSRRQEAQRLGRILRPKGGGLKNQQAYFYTLVSQDT
QEMFFSTKRQQFLINQGYSFRVLPDIQKYYRQGANEMGLTLKHMNTKKEELDMLAIVKKA
EDARGQEEKINVDDEVEKSSSSLASISGGNEIYYHSYEASTTTSRRRGKATKVPSTVHPL
FKTRTQHKD
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgttgaataaccatcttcacgatcaaaccactggaacatcatcaaatcgtcttcaatcg
gaagataaaaaaaggaaaaagaaagaaaaagaagcaaaaaagaagaagcaaaaatatgag
gaaattttaaacgatctagataatgaagtagcaaaaaaagcccaggaaaagcttgtgagt
gatattttcagtcaaaagaaggacgttcaatttgaccattcaaatttggaattaaaacct
gaccataaactccgtccagtttgggtttgttcaggtactgatggcaaatttcatattttc
atggagaccttttcaccaatttatcaacaggcttatgattttcttgttgctgttgctgaa
cctgtttcacgtcctgaaaatctacacgaatatgtattaactgaatattctctctatgca
gctgtcagtattggtatgaacaccgaacaaattattcaagttttggagaagctaagtaag
gttaaattatccgaagctctcatcaattttattagagatgtaacaagaaaatatggtaat
gtaaaattagttctgcagaaaaatagatttttcgtagagtcaccccatttgactatcatg
gaaaagttatatgaagataaaatcattagtgcagctgctattgttcctgatccaaatgag
tttccaaatgttgatagatccaaaagatttattattagaacacgatcaaaacaaaatgaa
ttggaaaagtttcaaaagcaagctcttgctaatacatcaactgtaaataagggatctaaa
attcaaactgaaatgataagagctgtaaatcaaattggagatgatgaagatgatgatgct
gatgatgattttgatatttcttcagcagttgaaacgttttatttattcgaaattaatcca
acagagtgtattgaatggaagaatcaatttaaattatggagtactattgatgagaatcgt
gtagtagtatttacttctcaggagaaggatgctttaccaaaagatgatgatcccttaatc
atcattacaacatacactatgattacccataccagaaagagaagtggtgaggcaaaggag
gttatggattacattcaaagtagagaatggggattattaattttagatgaggtccacgtc
gttcccgccaacatgtttagacatgttgcgagtgtaaagtctcattgtaaattaggattg
acagccactcttttacgtgaagataacaagacagacgatttatattttttaattggtcca
aaattatatgaagctaattggcttgatttacaacaaaaaggccatcttgctaatgtgcaa
tgtgtggaagtttggtgtcccatgactgccgagttttttgctgaatacttaacagccaat
gctaagaaaaagactttactttatgttatgaatccaaataagtttagagcttgtgaattt
ctgattagataccatgaaaagcaaggagacaaaatcattgtttttagtgacaatgttttt
gctctccaagaatatgctgaaaagttgggggtaccctacatttttggtaataccaaacaa
caagaacgtgtttattatttgaaccagttcagaaatactaaccattataacactattttc
atcagtaaggttggtgatacagcaattgacattcctgaggcaactgtgattattcaaata
tcatctcattttggtagtagaagacaggaggctcaacgtttgggtcgtatccttcgtcca
aaaggtggtggacttaaaaatcaacaggcctacttttacacactagtttctcaagataca
caagaaatgttcttctccacaaagagacaacaatttttaattaatcaaggctacagcttt
agagtcttgcctgatattcaaaagtattacaggcaaggtgctaatgaaatgggtctaact
ctcaaacacatgaataccaagaaggaagaattagacatgttggctattgtaaaaaaggct
gaagatgcaagaggccaagaagaaaagatcaacgttgatgatgaagttgaaaaatcatct
agtagtcttgcttcaatctctggtggaaatgaaatttattaccattcctatgaagcttct
acaacaacttccagaagaagaggtaaagctaccaaagttccttctactgtgcatccactt
ttcaaaaccagaacccaacacaaggattaa

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