Naegleria gruberi: NAEGRDRAFT_29347
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Entry
NAEGRDRAFT_29347 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03022
Basal transcription factors
ngr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NAEGRDRAFT_29347
09124 Replication and repair
03420 Nucleotide excision repair
NAEGRDRAFT_29347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_29347
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_29347
Enzymes [BR:
ngr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NAEGRDRAFT_29347
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NAEGRDRAFT_29347
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NAEGRDRAFT_29347
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
8863602
NCBI-ProteinID:
XP_002683056
JGI:
Naegr1_29347
UniProt:
D2UXM8
LinkDB
All DBs
AA seq
729 aa
AA seq
DB search
MLNNHLHDQTTGTSSNRLQSEDKKRKKKEKEAKKKKQKYEEILNDLDNEVAKKAQEKLVS
DIFSQKKDVQFDHSNLELKPDHKLRPVWVCSGTDGKFHIFMETFSPIYQQAYDFLVAVAE
PVSRPENLHEYVLTEYSLYAAVSIGMNTEQIIQVLEKLSKVKLSEALINFIRDVTRKYGN
VKLVLQKNRFFVESPHLTIMEKLYEDKIISAAAIVPDPNEFPNVDRSKRFIIRTRSKQNE
LEKFQKQALANTSTVNKGSKIQTEMIRAVNQIGDDEDDDADDDFDISSAVETFYLFEINP
TECIEWKNQFKLWSTIDENRVVVFTSQEKDALPKDDDPLIIITTYTMITHTRKRSGEAKE
VMDYIQSREWGLLILDEVHVVPANMFRHVASVKSHCKLGLTATLLREDNKTDDLYFLIGP
KLYEANWLDLQQKGHLANVQCVEVWCPMTAEFFAEYLTANAKKKTLLYVMNPNKFRACEF
LIRYHEKQGDKIIVFSDNVFALQEYAEKLGVPYIFGNTKQQERVYYLNQFRNTNHYNTIF
ISKVGDTAIDIPEATVIIQISSHFGSRRQEAQRLGRILRPKGGGLKNQQAYFYTLVSQDT
QEMFFSTKRQQFLINQGYSFRVLPDIQKYYRQGANEMGLTLKHMNTKKEELDMLAIVKKA
EDARGQEEKINVDDEVEKSSSSLASISGGNEIYYHSYEASTTTSRRRGKATKVPSTVHPL
FKTRTQHKD
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgttgaataaccatcttcacgatcaaaccactggaacatcatcaaatcgtcttcaatcg
gaagataaaaaaaggaaaaagaaagaaaaagaagcaaaaaagaagaagcaaaaatatgag
gaaattttaaacgatctagataatgaagtagcaaaaaaagcccaggaaaagcttgtgagt
gatattttcagtcaaaagaaggacgttcaatttgaccattcaaatttggaattaaaacct
gaccataaactccgtccagtttgggtttgttcaggtactgatggcaaatttcatattttc
atggagaccttttcaccaatttatcaacaggcttatgattttcttgttgctgttgctgaa
cctgtttcacgtcctgaaaatctacacgaatatgtattaactgaatattctctctatgca
gctgtcagtattggtatgaacaccgaacaaattattcaagttttggagaagctaagtaag
gttaaattatccgaagctctcatcaattttattagagatgtaacaagaaaatatggtaat
gtaaaattagttctgcagaaaaatagatttttcgtagagtcaccccatttgactatcatg
gaaaagttatatgaagataaaatcattagtgcagctgctattgttcctgatccaaatgag
tttccaaatgttgatagatccaaaagatttattattagaacacgatcaaaacaaaatgaa
ttggaaaagtttcaaaagcaagctcttgctaatacatcaactgtaaataagggatctaaa
attcaaactgaaatgataagagctgtaaatcaaattggagatgatgaagatgatgatgct
gatgatgattttgatatttcttcagcagttgaaacgttttatttattcgaaattaatcca
acagagtgtattgaatggaagaatcaatttaaattatggagtactattgatgagaatcgt
gtagtagtatttacttctcaggagaaggatgctttaccaaaagatgatgatcccttaatc
atcattacaacatacactatgattacccataccagaaagagaagtggtgaggcaaaggag
gttatggattacattcaaagtagagaatggggattattaattttagatgaggtccacgtc
gttcccgccaacatgtttagacatgttgcgagtgtaaagtctcattgtaaattaggattg
acagccactcttttacgtgaagataacaagacagacgatttatattttttaattggtcca
aaattatatgaagctaattggcttgatttacaacaaaaaggccatcttgctaatgtgcaa
tgtgtggaagtttggtgtcccatgactgccgagttttttgctgaatacttaacagccaat
gctaagaaaaagactttactttatgttatgaatccaaataagtttagagcttgtgaattt
ctgattagataccatgaaaagcaaggagacaaaatcattgtttttagtgacaatgttttt
gctctccaagaatatgctgaaaagttgggggtaccctacatttttggtaataccaaacaa
caagaacgtgtttattatttgaaccagttcagaaatactaaccattataacactattttc
atcagtaaggttggtgatacagcaattgacattcctgaggcaactgtgattattcaaata
tcatctcattttggtagtagaagacaggaggctcaacgtttgggtcgtatccttcgtcca
aaaggtggtggacttaaaaatcaacaggcctacttttacacactagtttctcaagataca
caagaaatgttcttctccacaaagagacaacaatttttaattaatcaaggctacagcttt
agagtcttgcctgatattcaaaagtattacaggcaaggtgctaatgaaatgggtctaact
ctcaaacacatgaataccaagaaggaagaattagacatgttggctattgtaaaaaaggct
gaagatgcaagaggccaagaagaaaagatcaacgttgatgatgaagttgaaaaatcatct
agtagtcttgcttcaatctctggtggaaatgaaatttattaccattcctatgaagcttct
acaacaacttccagaagaagaggtaaagctaccaaagttccttctactgtgcatccactt
ttcaaaaccagaacccaacacaaggattaa
DBGET
integrated database retrieval system
