Naegleria gruberi: NAEGRDRAFT_29498
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Entry
NAEGRDRAFT_29498 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K10756
replication factor C subunit 3/5
Organism
ngr
Naegleria gruberi
Pathway
ngr03030
DNA replication
ngr03410
Base excision repair
ngr03420
Nucleotide excision repair
ngr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NAEGRDRAFT_29498
03410 Base excision repair
NAEGRDRAFT_29498
03420 Nucleotide excision repair
NAEGRDRAFT_29498
03430 Mismatch repair
NAEGRDRAFT_29498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngr03032
]
NAEGRDRAFT_29498
03036 Chromosome and associated proteins [BR:
ngr03036
]
NAEGRDRAFT_29498
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_29498
DNA replication proteins [BR:
ngr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
NAEGRDRAFT_29498
DNA Replication Termination Factors
ELG1-RFC complex
NAEGRDRAFT_29498
Chromosome and associated proteins [BR:
ngr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
NAEGRDRAFT_29498
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
NAEGRDRAFT_29498
Check point factors
HRAD17(Rad24)-RFC complex
NAEGRDRAFT_29498
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_lid_RFC1
RCF1-5-like_lid
AAA_14
AAA_22
AAA_24
AAA_16
AAA_30
SLFN-g3_helicase
DUF815
AAA_5
AAA_19
AAA_11
nSTAND3
RuvB_N
nSTAND_NTPase5
DEAD
ResIII
ATPase_2
Mg_chelatase
AAA_3
bpMoxR
AAA_assoc_2
AAA_18
AAA_7
TIP49
AAA_25
Gp44_lid
DNAX_ATPase_lid
Phage_RepB
NPHP3_N
RNA_helicase
AAA_28
Motif
Other DBs
NCBI-GeneID:
8863712
NCBI-ProteinID:
XP_002683633
JGI:
Naegr1_29498
UniProt:
D2UXA1
LinkDB
All DBs
AA seq
351 aa
AA seq
DB search
MPENNSSSSDAKMWIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTS
TVLAIAKKLFGNRLTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKL
IILDEADQMTKDAQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHE
VVSRLEEICKEENVIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFGQITEDNVHMCTGN
PLKEDIRLIINSLFNDSLADAYKKVMNIKTERGLALQDILRDIHPYVMKLNIPIAVRIYL
LEKMSDIEYRLSLGTSESLQTMALISAFQIAKEPVSSKNEEAALKLLTSEA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaataattcttcatcatctgatgctaaaatgtggattgaaaagtatcgtcca
catgagttgacggatttactttcccacacagaaattatttcaacaattcaacgattgata
gatggtggtaaattacctcaccttttactttatggtccaccaggtacaggtaaaactagt
acagtgttggccattgccaagaaattattcggaaataggttgacacaaaatgttcttgaa
ttgaatgcgagtgatgatagaggtattgatgttattagaaatgaaatcaaggactttgca
tcaacgaaaggattgaaattctttacagctcaaaaagatacaacacctgatattaaatta
attattttggatgaggctgatcaaatgactaaagatgcccaagctgcattgagacgtact
attgagaagtattctaaaaatgtgagattttgtttaatttgcaattatgtgaataagatt
attcctgcattgcaatccagatgtactagatttagattttcccctctcaagaaacatgaa
gttgtttctagacttgaggaaatttgtaaagaagaaaatgtaatctataaccaagttgga
ttggatgctatttacagattgtctaatggtgatatgagaaagtgtgtcaatattctccaa
tcaacattcatgtcatttgggcaaataacagaagacaacgttcacatgtgtacaggtaac
ccattgaaggaagatattagattgattattaattctttatttaatgactcacttgctgat
gcctataaaaaggttatgaacatcaagacagaaagaggattggccctccaagatattctg
agagatatccatccatacgtaatgaaattgaacattccaatagcagtaagaatttattta
ttagaaaagatgagtgatatcgaatatagactttcattaggaaccagtgaatctttacaa
actatggctcttatttcagctttccaaattgctaaagagcctgtatcttcgaagaatgaa
gaagctgccttgaaattattaacctcagaagcgtaa
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