Naegleria gruberi: NAEGRDRAFT_29694
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Entry
NAEGRDRAFT_29694 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K12855
pre-mRNA-processing factor 6
Organism
ngr
Naegleria gruberi
Pathway
ngr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NAEGRDRAFT_29694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_29694
Spliceosome [BR:
ngr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
NAEGRDRAFT_29694
Complex C
U5 SnRNP specific factors
NAEGRDRAFT_29694
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_19
TPR_2
TPR_1
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
8855366
NCBI-ProteinID:
XP_002682714
JGI:
Naegr1_29694
UniProt:
D2UZP1
LinkDB
All DBs
AA seq
1003 aa
AA seq
DB search
MFGEPPPGYVAGIGRGATGFTTRSDIGPARLPSRFTQPQGSSSNSTTEEENEQETNQTFD
EWSGYGGNILGRVTGVEDEEDKEADSIWSAISQRMENKKKRKNVTENENQTSKYAKYSVL
TSSLDSQKPKIAATFSDIKEELKYLSKEEWNIPEVSGSAVNSKNPNRLNQQMYERYTAAP
DQLILDKLNNNTLKFNNTADTGKMNQSGTLTDLRALGEMKETIMKSKLQSLEDSISGTST
VDPKNYMSGLDSQIVLGSEERVQIKKYRKLFKRATQVRPENIGSWMGRARLEELAGDLKK
ACKVIEKACNIVTDSEELWLESIRLNEQFDKQNKNNILAQSVCCQALQACPKSVKLWLKA
CELESDLDKRKKILRKAIQAQPESLQLWKEAIDLETEEQSAKTLLESALEYIPNSIDLWL
ALAKLNPYKDAKKVLSRAISKLPREPLIWISGAYLEEEHYNTETTNTNGKNSIQKVIKNA
IETLKKLKEEGLDRDEWIGYAKNAEKSEHFITCEAIINEMIGYSLTDVRERKSQYIRDAN
NLATEGFMKCAKAIFECAIREFPTKKSVWMNYYEFQIKYQKEDTLTTRNLLKQATTECPS
CQNLWLIRAKYEWKVFSNIQNARDVLQEGFEQLKIFNILLAAVKLEYENEEYLRARLLLF
NSRCLLDEKKEVTEQADAGNIYIRSALFERYVFNNESMRKYEILNEGLSKYPKEPKLYLM
KGQLEEGQIYTLLNMNSLSLEKYNDISNEVSLIYEAGIEKCPNSIPLWTSLIKLHFNPLL
KTIPPNINKARAIIDRALLKNPSSATLWLSLVKLEYYVSSTNGVGSVNNTSLATLMKGIQ
AIGSNKKQLGVLWSFTIPLEIVQKRKSSCANALKHCDRDIYVISQIALDFYRERKIDKAK
EWLKKALTIDSTNGDMWIYLYKIECLHGNQPGIIEEECKKAEPKFGEIWTFISKQLNLYG
YEKLDSISILKKSLNLLDLNNNIFLTLVTTFDFDDYYANQLNV
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgttcggagaacctcctccaggctatgttgctggtatcggaagaggtgcaacaggtttt
acaacaagaagtgatatcggacctgctagattaccatcacgatttactcaaccacaagga
tcttctagtaattcaacaacagaggaagaaaatgaacaggaaacaaatcaaacatttgat
gaatggagtggatatggtggaaatattttaggacgtgtgacaggagttgaagatgaagag
gataaggaggctgattctatttggagtgccatatcacaaagaatggaaaataagaaaaaa
agaaaaaacgtaactgaaaatgaaaatcagacttcaaaatatgctaaatattcagttctg
acaagctctttggattctcaaaaaccaaaaattgcagctacattttcagatattaaagaa
gaattaaaatatctttcaaaggaggaatggaatattccagaggtgagtggaagtgctgtc
aattctaaaaatccaaataggcttaatcaacaaatgtatgaaaggtacacagcagctcct
gatcaattaatacttgacaaattgaataataatacgcttaaatttaataatacagcagat
actggtaaaatgaatcaatctggtactcttacagatttgagagctttgggagaaatgaag
gaaactattatgaaaagcaaattgcaatcgttagaagattcaatttctggtacatcaaca
gttgacccaaaaaattacatgtctggtttggattcccaaatagttttgggaagtgaagaa
agagttcaaatcaagaaatatagaaagctattcaagagagcaacacaggttcgtcctgag
aatattggaagttggatgggaagagctcgtttggaagagttagctggagatcttaaaaaa
gcttgtaaagttattgaaaaggcttgcaacattgtgacagatagtgaggaattatggctc
gaatctattcgtttgaatgaacaatttgacaaacagaataagaataatatactagctcag
tcagtgtgttgtcaagcattacaagcatgtccaaagagtgtcaagttgtggttgaaggca
tgtgaattggaatcagatttggataagagaaagaaaattcttagaaaggctattcaggca
caaccagagagcttacaactctggaaggaagctattgatttagaaactgaagaacaatct
gcaaagactttactagagagtgctcttgaatatattcctaatagtatagatttgtggttg
gctcttgctaaattaaacccttacaaggatgccaagaaagtactatctagagctatttct
aaattaccaagagagcctctcatttggatttctggtgcctatctagaagaggaacattac
aataccgaaacaacaaacactaatggaaagaatagtatccaaaaggtcattaagaatgct
attgagacattgaaaaagctgaaggaggagggattagatcgtgacgagtggataggatat
gcaaagaatgcagaaaaatcagaacactttataacatgtgaagcaataattaatgaaatg
attggatattctcttactgatgtgagggaaagaaaatcacaatacattcgtgatgccaat
aatttggccactgaaggatttatgaaatgtgccaaggccatttttgaatgtgcaatcagg
gagtttccaaccaaaaagtctgtatggatgaattattacgaatttcagatcaaatatcaa
aaggaggacactctcacaaccagaaatttgctcaaacaagcaacaactgaatgtccaagt
tgtcagaatttatggttaattagagccaagtatgaatggaaggtatttagcaatattcaa
aatgccagagatgttcttcaggaaggttttgagcaattgaagattttcaatattttactg
gcagctgtcaaacttgaatatgagaatgaagaatatttgagggctagactacttttattc
aattctcgatgcctcctagatgaaaagaaggaagttaccgaacaagccgatgcaggaaat
atttacattcgttctgccttgtttgaaagatatgtgttcaataatgaatccatgaggaaa
tacgaaatactgaatgagggtctatccaaatatccaaaagaacctaaattgtacctaatg
aagggccaactcgaggagggacaaatttatactctattgaacatgaactctctatctctt
gagaagtataacgacatttccaatgaggtttctcttatttatgaggcaggtattgaaaaa
tgtccaaactctattcctctatggactagtttaatcaaattgcactttaatcctctcctc
aagactattcctcctaatattaataaggcaagagctattattgatagagccttacttaaa
aatccatctagtgcaactttgtggctctctcttgtcaagttggaatattatgtgagtagt
actaatggagttggtagtgtaaacaacacaagtcttgccacactaatgaagggtattcaa
gctattggttccaataagaaacaattgggagtattgtggtcctttactataccattggag
attgttcaaaaaagaaagtcttcttgtgctaatgcactcaagcattgtgatagagatatt
tatgtaatctcccaaattgcactcgatttctatagggaacgtaagattgataaggcaaag
gagtggttgaaaaaggccttgactatcgattctacaaatggtgacatgtggatttacttg
tacaaaattgaatgtttgcatgggaatcaacctggaattattgaggaagagtgtaaaaaa
gcagaacccaagtttggtgaaatttggacatttatttcaaaacaattgaacttgtacgga
tatgaaaaattggattcaatttcaattttgaaaaaatcattgaacttgttagatttaaac
aataacattttccttacactggtcacaacgtttgactttgatgattactatgccaatcag
ttgaacgtttga
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