KEGG   Naegleria gruberi: NAEGRDRAFT_34170
Entry
NAEGRDRAFT_34170  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
ngr  Naegleria gruberi
Pathway
ngr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NAEGRDRAFT_34170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngr03019]
    NAEGRDRAFT_34170
Messenger RNA biogenesis [BR:ngr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NAEGRDRAFT_34170
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     NAEGRDRAFT_34170
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 8847633
NCBI-ProteinID: XP_002676482
JGI: Naegr1_34170
LinkDB
AA seq 150 aa
MSPQEDDEENDELKVDFYFPGAASLSDQLDKKVMVILRDGKKLIGILRCYDQFVNMTLEK
TVERIVVEDKYGDLDVGLYIVRGENVVLMGEVDESRDLSLKQVPVDEILMLSKLEQEKEE
ERSKLKQLHLRNRGKISISRFKLFILFRFT
NT seq 453 nt   +upstreamnt  +downstreamnt
atgtctcctcaagaagacgacgaagaaaatgatgaattaaaagtggatttttactttcca
ggagcagccagtctttcggatcaattagataaaaaagtgatggtaattttgagagatggt
aaaaaactaatcggaattcttcgttgttatgaccaatttgtaaatatgactctagagaaa
actgttgaacggatagtagtagaagataaatatggtgatttggatgttggtttatatatc
gttagaggtgaaaatgtagtattaatgggagaagttgatgaatcacgagacttatcttta
aaacaagttccagttgatgaaattttaatgttaagtaaattagaacaagaaaaagaagaa
gaaagatccaaattgaaacaattacatttaagaaatagaggtaagatttcaatatcaaga
tttaaattatttattctttttaggtttacttga

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