Naegleria gruberi: NAEGRDRAFT_34909
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Entry
NAEGRDRAFT_34909 CDS
T01241
Name
(RefSeq) 3'-5' exoribonuclease/RNA-binding protein-like protein
KO
K12587
exosome complex component MTR3
Organism
ngr
Naegleria gruberi
Pathway
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_34909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_34909
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NAEGRDRAFT_34909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
8858886
NCBI-ProteinID:
XP_002682945
JGI:
Naegr1_34909
UniProt:
D2UZQ3
LinkDB
All DBs
AA seq
300 aa
AA seq
DB search
MSSSSSITNILNPTSTASLLNQPPALSVRPIYPSNNNTTKNNNTTINNNNATSSKNLINI
ETGKRQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDI
GAIQCEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVI
DVYCFILQDDGSALSAAISCASLALANAGIEMYDMVSACTTSELEGHIIVDPTNLEYKYA
SGGMVCAYMSNLNQVTQLSQVGDMSYQKIGEAMDLCIDGCSKLNQLMQQCLLNNSSTNEK
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaagtagcagcattaccaatattttaaatccaacatcaacagcttcactcttg
aatcagcctcctgcactttcggtgagaccaatctatccatcaaacaataatacaacaaag
aataataataccactattaataataacaatgctactagtagtaaaaatttaattaatata
gaaacaggaaaaagacaagataatcgtacatgtgataaattccgtaatgtattcatgcaa
gttggagtgataaaacaagcacgtggaagtgcctatatggaatatcaaaatggaactaaa
gtaatttgttcagtctatggaccaagacaaatcagtgccaggaatgaatttagtgatatc
ggagcaatacaatgtgaatatagagttgctaattttgcttatcaatcttcaaataatcaa
tcaacatttttaaataattcaagtaataataataggagacatcatgttgaaaattctatt
catttacgtgaagctttggaggtttcaattagattggataaatatccaaagagtgttatt
gatgtatattgttttattttacaagatgatggaagtgctttgagtgctgctattagttgt
gctagtttagctcttgcaaatgctggcattgaaatgtatgatatggttagtgcttgtaca
acaagcgaattggaaggtcatattattgttgatccaactaatttggaatataaatatgca
agtggtggtatggtttgtgcttacatgtccaatttaaatcaagtaactcaattatctcaa
gttggtgatatgagttatcagaaaattggtgaagctatggatttatgtattgatggttgt
tctaaattaaatcaattaatgcaacaatgcttattgaacaatagttcaacaaatgaaaaa
taa
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