KEGG   Naegleria gruberi: NAEGRDRAFT_44232
Entry
NAEGRDRAFT_44232  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
ngr  Naegleria gruberi
Pathway
ngr03013  Nucleocytoplasmic transport
ngr03015  mRNA surveillance pathway
ngr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NAEGRDRAFT_44232
  09122 Translation
   03013 Nucleocytoplasmic transport
    NAEGRDRAFT_44232
   03015 mRNA surveillance pathway
    NAEGRDRAFT_44232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngr03019]
    NAEGRDRAFT_44232
   03041 Spliceosome [BR:ngr03041]
    NAEGRDRAFT_44232
   03009 Ribosome biogenesis [BR:ngr03009]
    NAEGRDRAFT_44232
   03012 Translation factors [BR:ngr03012]
    NAEGRDRAFT_44232
Enzymes [BR:ngr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     NAEGRDRAFT_44232
Messenger RNA biogenesis [BR:ngr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     NAEGRDRAFT_44232
   mRNA cycle factors
    Stress granule specific factors
     NAEGRDRAFT_44232
Spliceosome [BR:ngr03041]
 Complex C
  Other components
   EJC/TREX
    NAEGRDRAFT_44232
Ribosome biogenesis [BR:ngr03009]
 Eukaryotic type
  90S particles
   Helicases
    NAEGRDRAFT_44232
Translation factors [BR:ngr03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    NAEGRDRAFT_44232
SSDB
Motif
Pfam: Helicase_C DEAD AAA_22 Cas3-like_C_2 ResIII ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 8858906
NCBI-ProteinID: XP_002682965
JGI: Naegr1_44232
UniProt: D2UZU0
LinkDB
AA seq 346 aa
MGLNDDLLRGIYQYGFTKPSAIQQRAIKPITQGNDLIAQSQSGTAIVLSPTRELAQQTQR
VMSYLGDYLHAQVHACVGGNKVGEDIKKLESGVHVVSGTPGRVYDMMRQQHLNTKHIKLL
VLDEADEMLSQGFKEQIYQIYRLLNNTQIVLISATLPAEVLEITQQFMTDPIRILVKRDE
VTLEGIKQFFIAVEKEDWKFETLCDLYDSLTVTQAVIFCNKRDKVEWLAKQMKKHNFTVS
FMHGQMPQKEREAIMEEFRKGQSRVLITTDVWARGIDVQQVSLVINYDLPTNRENYIHRI
GRSGRYGRKGVAINFVTEMDVGVLKDIEQHYSTTIEEMPAKIDQYM
NT seq 1041 nt   +upstreamnt  +downstreamnt
atgggattaaatgatgatttacttcgtggaatttatcaatatggatttacaaaaccatca
gctatccaacagcgagctattaaaccaattacacaaggaaatgatttaattgcacaaagt
caatcaggaacagcaattgttctctcaccaacacgtgaactcgctcaacaaactcaaaga
gtcatgtcatacctaggagattatcttcatgcacaagtccatgcctgtgttggaggtaat
aaagttggtgaggatattaaaaaattggaaagtggagttcatgttgtgagtggtacacct
ggaagagtttatgatatgatgagacaacaacacctcaatactaaacatatcaaattactg
gtattggatgaagctgatgaaatgttaagtcaaggatttaaggaacaaatttatcaaatt
tatcgtctattgaataatacacaaattgtattaatttctgctacacttcctgcagaagtt
ttggaaattacacaacaatttatgactgatccaattagaattcttgtaaagagagatgaa
gttactttggaaggaattaaacaatttttcattgctgtagaaaaggaagattggaaattt
gaaactttatgtgatttatatgactctcttactgttacacaagctgtcatattttgtaat
aagagagataaagtagaatggcttgctaaacaaatgaagaaacataactttacagtatca
tttatgcatggacaaatgccacagaaggaacgtgaagccattatggaagaattcagaaaa
ggtcaatcgagagtgttaatcactacagatgtgtgggctagaggtattgatgtacaacag
gtgtcacttgttatcaattatgatttgccaacaaatagagaaaattatattcacagaatt
ggtagatctggtagatatggaagaaagggtgttgcaattaactttgttacagaaatggat
gttggtgttttgaaagatattgaacaacactattccacaaccattgaggaaatgccagct
aaaatcgatcaatatatgtaa

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