Naegleria gruberi: NAEGRDRAFT_45121
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Entry
NAEGRDRAFT_45121 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
ngr
Naegleria gruberi
Pathway
ngr03013
Nucleocytoplasmic transport
ngr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NAEGRDRAFT_45121
09122 Translation
03013 Nucleocytoplasmic transport
NAEGRDRAFT_45121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_45121
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_45121
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
NAEGRDRAFT_45121
Spliceosome [BR:
ngr03041
]
Complex C
Other components
EJC/TREX
NAEGRDRAFT_45121
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
NAEGRDRAFT_45121
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
8859079
NCBI-ProteinID:
XP_002683174
JGI:
Naegr1_45121
UniProt:
D2UY91
LinkDB
All DBs
AA seq
1683 aa
AA seq
DB search
MTQTKRRIFRKDRSASPSTTSSGAETNPTLQQPELTTTEAKTPIRMKHVTTDQADLFDFS
KWDSEISPMYVVNKIFNSHHNYSRQTYLLSVLSKQLEITIKHNILSHFFFNLLNQQNKIS
TQKFLELIQSISSQHPDQKNTLLISLALSIELQSNRLPEEHNDYVYLVNITKSLLENSVF
QIGLLKQLMNFDFLGACGISTRNMFLKSKTRELYTQDRFNLLHEENEGFSKLISIIIDPN
NLSIQKLEQITNEIIQIIGFFNLEPNRVLDILLDAYENNLDSDVLLNLVRSLFNNQHLKH
VIGFKLSSYHNKVTPTSLIVMIVKLMQKELFIFQDIMYYLGPHSVDDLEHFHHEYETELK
RSREYTITVDGAVEKIEPRFEKSYPEFQKDQKFGLLIQLLNFDMIAEAISMLDILSKYDP
HWNYDISIACCKSIEKISTPLYEKYTVLNNYISITNDDKSTIENYLFPLICHTKYELYRE
IKSLTKLIRLLKLYMKQPNDHHQKLVQVLASILSSLCFVGMNTSIVSEFWSILALLPYQT
RYEIYGFTRQHGYEKQPKMLAQQNWVSRGIRHIFNRISFANVRTKAREILPYTVSNPIIV
CEEYIRKCETYDNQIPLCVDVSQFSPEISHDIMQYCLLNRLLSNQSSNIKEDGISIATWL
SNLASLYGLFFKTYPFVDMKPVLNYLTQRLKEGLWEHLVILTEIIKNTSTLEYSEEINQH
QLEAQAGGKVLHSLAGTFSPNSKNTGVESMKKLKDTILSSGSGVSLVLLLAKLSNYGIHI
HEDYQEWKHVADSKDMCHVAYLLLLKFLISEIKFVFEEEALGNELNSSLLIPSVDTLKAY
DLSTPFIFSIVRLTRSSIPPNILQSLLPLDISNNVTSQFYNFFWMKDLSDIYVPTSLYNS
TMNEYGNHRSSLVREKDEQNQKYEASMKEFKEICHKFFMAESEFVDMTTILQHCFLPRAL
FSAADSLYCAKLVHLLHTSETPKFSFNLFLQYLLEYVPGLLLTCTENEAKRLSRLVQFLL
PTANRWYESQNEFNRECKNKPGSFVSVKKYPQLSSSTDDIYTKLDFENYQKFHFLIMENM
LNNCILLLKSNDHIKIRIAMLFLSPLVKTNTFPFYSRHCDALLEISDSLKEHHVENIKVL
SNTYFPLITSIRKKSENPSFIKPLLKFSVKPTNINIPSRDNEIPANSITPNTAISESELT
SLTPQKQEDTLGDFSDSGSTSLSPPTTLSTNIEATIVVRGEDSTIPPIENTPLETPTVED
VKMSEASNEAIQPYDTSLPESNVEAASQDAPVEDVPKAETVVTISVEETKNTTPTITEEK
PQEEAVDIEKSLTEEPKSPEYVPIEQQLENEYKSQVQESDNILDSSNSENTQSDQNMMNS
KLVQLLKQKQQTKSEDKSEEVKDYVKDIQQLLILPINNPLQVIKQSQRTTENTAPSSERK
QGNDSKEIRSLQSSRRIDDNLKRDTHPSSQERRLSSNASSTSSKESSQKKESETKTNKSN
EDKSDIRYESSRSRNDSRETQKNENSSQKNDNSRLNRSEGRNLDNRNDRSDNSRNDRSDN
RNFDNRDASRYSDRYNDRRSSSQSSSNRDNRNNDFRRNDSSSNRSDKGTSGNDRRDTRGA
GDSYQSDKRNSLGGNSTSSDNNRRGSSSGELKRQYSNESSSSSSSNNRQSEHESETKKKR
FHR
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaacaaaaagaagaatatttcgaaaagataggtctgcttctccttccacaact
tcatcaggcgcggaaacgaatccaacacttcagcaaccagaattaacaacaacagaagcc
aaaacgccaatcagaatgaagcatgttaccactgatcaagctgatttgtttgacttttca
aaatgggattccgaaatatcaccaatgtatgttgttaacaaaatattcaatagtcatcac
aattattccagacaaacatatttattatctgtcctttcaaagcaattagaaattacaatc
aaacataacattctttctcatttcttttttaatttgcttaaccaacaaaacaagatatca
acacaaaagttcttagaattaatccaatccatatcttcacaacatcccgatcaaaagaat
actttattaatatctcttgcactttccatagagttacaatcaaatagattgccagaagaa
cacaatgattacgtatatctggtaaatatcacaaagtctcttttagaaaactctgttttt
caaattggtttacttaaacaattgatgaattttgattttttaggagcttgtggaatctcg
actaggaatatgtttttaaaaagcaaaactcgagaattatatacgcaggaccgttttaat
cttttacacgaagaaaatgaaggattctcaaaactaatttcaatcatcatagatccaaat
aatttgtcaattcaaaagttggaacaaataaccaatgaaattattcaaatcataggattt
ttcaaccttgaaccaaatagggtacttgatattctattggatgcttacgaaaataattta
gacagtgatgttttactgaatcttgttaggtccctttttaataatcaacatttgaagcat
gttattggatttaaactttcaagctatcataacaaggttactccaacaagtttgattgta
atgattgttaaattgatgcaaaaagaactttttatttttcaagatattatgtattattta
ggtccacattctgttgatgatttggagcattttcatcatgaatacgaaacagaattgaaa
agaagtagagaatacacaattacagttgatggagcagttgaaaaaatcgaacccagattt
gaaaaatcgtatccagagtttcaaaaggatcaaaaatttggattattaatccaacttttg
aactttgatatgatagctgaagctatcagcatgttagacatcctatcaaaatatgaccct
cattggaattatgatatttccattgcttgctgtaaatctattgaaaaaatttctactcct
ctatatgaaaaatatactgtattgaacaactatatttcaataaccaatgatgacaaatca
actattgaaaattacctctttcctcttatttgccataccaaatatgaactgtatagagaa
atcaaatcccttacaaagctcatacgtctacttaaattatatatgaaacaaccaaacgac
catcatcaaaaactagtgcaagttttagcatcaattctctcatcactatgctttgtagga
atgaacacttctatagtttcagaattttggagtattttggctctattaccctatcaaacc
agatatgaaatttatggctttacaaggcaacacggttatgagaaacaacccaaaatgctc
gctcaacaaaattgggtgtcgagaggtattagacatatatttaatagaatttcctttgca
aatgtgagaacaaaagcaagagagatacttccatatactgtatcaaatccaattatcgta
tgtgaagagtatattagaaaatgtgaaacctacgataatcaaatacccctttgtgtagat
gtatctcaattctctccagaaatttcccatgacattatgcaatactgtttacttaataga
ttactttccaatcaaagcagtaacattaaggaagatggtatttctatagcaacttggctc
tctaatttagctagtttatatgggctgtttttcaaaacatacccatttgtggatatgaaa
cctgttcttaactatttaacccaaagattgaaggagggactttgggaacatttggtaatt
ttgactgaaattatcaaaaatacctcaaccttggaatattctgaagagattaatcaacat
caactagaggcacaagcaggaggaaaagttttacacagtctagcaggaactttttctcca
aactctaaaaatacaggcgtagaatcaatgaaaaaacttaaagatacaatactgtcaagt
ggaagtggtgtatcactggttttgttgcttgcaaagctcagtaattatggaattcatatc
catgaagattatcaagaatggaagcatgttgcagattcaaaggatatgtgccatgtagcc
taccttttattattgaaattcctcatttcagaaatcaagtttgtctttgaagaagaggct
ttgggtaatgaacttaactcttccctacttattccaagtgtggataccttgaaagcatat
gatttgtcaacaccatttattttttcaattgtaagacttacacgctcttccatcccacca
aatatattacaaagcctattaccattagacataagcaataatgtcacttctcaattttat
aactttttctggatgaaagacctttcagatatttatgtaccaacttccctttacaacagt
accatgaatgaatatggcaatcatagatcctccttagtaagagaaaaggacgagcaaaat
caaaaatatgaagcatctatgaaagaattcaaggaaatttgtcacaaattctttatggct
gaatctgaatttgtggacatgactactattctccaacattgctttcttcctagagctttg
ttttctgcagctgactctttatactgtgcaaaacttgtccatctattacatactagtgaa
actccaaagttttcgttcaatctctttttacaatatttattggaatatgtgcctggctta
ctgttgacctgtacagaaaatgaagctaaaagattgagtagacttgttcaatttttactc
ccaacagcaaatagatggtatgaaagccaaaatgaattcaatcgggaatgtaaaaacaag
cctggttcgtttgtatctgtaaagaaatatcctcaactatctagctcaacagacgatata
tacaccaaactagattttgaaaattatcaaaaattccactttttaataatggaaaatatg
ctcaacaattgcattttgctactcaagagtaatgatcatatcaaaattcgaattgccatg
ttatttctatctcctcttgtcaagacaaacactttcccgttctattcccgtcactgtgat
gctcttttagagatatcagattcattgaaagagcaccacgttgaaaatatcaaggtttta
tctaacacatatttcccattgataacctccatcagaaagaagagtgaaaatccaagcttt
atcaaacccctattgaaattctctgttaagccaactaatatcaatattccctccagagat
aatgaaattccagcaaactcaataactccaaatactgctatttcagaaagtgaacttacc
tctctcactccccaaaaacaagaagacactctcggtgacttttctgattctggtagtacc
tcactttctccaccaacaaccctttccacaaatattgaagcaacaattgttgttcgagga
gaagattcgactatccctcctattgagaatactcctcttgaaacacctacagtggaagat
gttaaaatgtcggaggcctcaaatgaagcaattcaaccttatgatacaagtttacctgaa
tctaatgtagaggctgcttcacaagatgctcctgtggaggatgttcctaaagcagaaact
gtggttacaatttctgtggaagaaacaaagaataccacaccaaccattacagaggaaaaa
ccccaagaggaagctgttgatattgagaaatctctaacagaagaaccaaaatctccagaa
tacgtcccaattgaacaacaattagaaaatgagtacaaatctcaagtacaagaatctgat
aacattttagatagttccaattctgaaaatacccaatctgatcaaaatatgatgaactcc
aaattggtacagctcctcaaacagaaacaacaaacaaaatcagaggataaatctgaggaa
gttaaggactatgttaaagacattcaacaattactcattcttccaattaacaatccactc
caagtaatcaagcaatcacaaagaacaactgaaaacacagctccatcctctgaaagaaaa
caaggcaatgactcgaaggagattcgttctctacaatcatccagaagaattgatgataat
ctaaaacgtgacacacacccctcttcacaagaaagaagactatcatcaaatgcttcttca
actagtagtaaggaatcatcccaaaaaaaagaatcagaaaccaagacaaacaaatctaat
gaagataagtcagacattagatatgaaagttcaagaagtaggaacgattcaagagagact
caaaaaaatgaaaatagctcacaaaagaatgacaattctcgtttgaatagaagtgaaggc
agaaaccttgacaatagaaacgacagaagtgataatagtagaaacgatagaagtgataat
agaaactttgacaaccgtgatgcttccagatacagcgacagatataacgatagaagaagt
tcttcacaaagcagttccaatagggataatcgaaataatgattttagaagaaatgattct
tcttcaaacagatctgataagggaacatccggcaatgatagacgagatacaagaggagct
ggtgactcgtaccaatctgataagagaaatagtttgggtggaaatagtacatcctctgat
aataacagaagaggatcctcttctggcgaattgaaaagacaatacagtaatgaatcatcc
tcaagtagctccagcaacaatagacaatcagaacacgaatcagaaacaaagaaaaaacga
ttccacagataa
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integrated database retrieval system
