Naegleria gruberi: NAEGRDRAFT_46148
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Entry
NAEGRDRAFT_46148 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03013
Nucleocytoplasmic transport
ngr03015
mRNA surveillance pathway
ngr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NAEGRDRAFT_46148
09122 Translation
03013 Nucleocytoplasmic transport
NAEGRDRAFT_46148
03015 mRNA surveillance pathway
NAEGRDRAFT_46148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_46148
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_46148
03009 Ribosome biogenesis [BR:
ngr03009
]
NAEGRDRAFT_46148
03012 Translation factors [BR:
ngr03012
]
NAEGRDRAFT_46148
Enzymes [BR:
ngr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAEGRDRAFT_46148
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
NAEGRDRAFT_46148
mRNA cycle factors
Stress granule specific factors
NAEGRDRAFT_46148
Spliceosome [BR:
ngr03041
]
Complex C
Other components
EJC/TREX
NAEGRDRAFT_46148
Ribosome biogenesis [BR:
ngr03009
]
Eukaryotic type
90S particles
Helicases
NAEGRDRAFT_46148
Translation factors [BR:
ngr03012
]
Eukaryotic type
Initiation factors
eIF-4
NAEGRDRAFT_46148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
8852742
NCBI-ProteinID:
XP_002681786
JGI:
Naegr1_46148
UniProt:
D2V2E2
LinkDB
All DBs
AA seq
372 aa
AA seq
DB search
MSDSTSFEDLNVSENLLKGIYCYGFEMMLPSQIAILKSFESTKSCTLVQWIAGSGKTIGL
IIKVLKHVDFSKKDDQLQGLVLVPNEFLAYQVRSAMLALADFIQEAKISSDWRENPRILI
TTPELAIKKNRINFTSLEILAIDEMDIMLEIGCGRRKCIKSIFNQLPKGCEILGTGLRML
PKECYMYDDYLKDSLIITFDQREKQLGDNIYENFVYCPKMDQKLSLLQSIQNGTVSTVLF
CNTYSRAEQFHVILKDSIFPSLLVVPQCGKLHQLYYESLYLIGTHDDWYGIDMQWCELVV
HFDVICDKAISRMRSGRCRRRGKALYLPSTLEELDFVCELLYGSPNCKYHRIMLKNSKYY
DVCINFEMDLKN
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattctacatcttttgaggatttaaatgtttcggagaatcttttaaaaggaatt
tattgctatggatttgaaatgatgcttccctcccaaatagccatcttgaaatcttttgaa
tcaacgaaatcttgcacactagttcaatggattgcaggatcagggaaaactattggattg
ataattaaagtattgaaacatgttgatttttcaaagaaggatgatcaattgcaaggttta
gttctagttccgaacgagtttttggcctatcaagtaagaagtgctatgcttgctcttgct
gattttattcaagaggcgaaaatttctagtgattggagagaaaatccaagaattttgatt
accactccagaattagcaattaagaagaatagaattaattttactagtttggaaattctt
gcaattgatgaaatggatatcatgttagagattggatgtggaagaagaaagtgtattaag
agtattttcaatcaactcccaaaaggatgtgaaattctgggaactggtttgagaatgtta
cccaaagaatgttacatgtatgatgattatttgaaggattcacttattattacattcgat
caaagagagaagcagttgggagataatatttatgagaatttcgtctattgtccaaaaatg
gatcaaaagctcagcttgctacaatccattcaaaatggaactgtctctacggtactattc
tgcaatacctactccagagcagagcagtttcatgtcattctaaaagattcaatatttccc
tccctattggttgttcctcagtgtgggaaattacatcaactgtattatgaatcgttgtat
ttgattggcactcatgatgattggtatggaattgacatgcagtggtgcgaattggttgtg
cattttgatgtcatttgtgataaggcaattagtagaatgcgatctggaagatgtagaaga
agaggaaaagcattgtatcttccctcaacattggaagaattggattttgtgtgtgaattg
ctttatggatcaccaaattgtaaatatcatagaatcatgctgaaaaattcaaaatattac
gatgtttgcatcaattttgagatggatttaaaaaattga
DBGET
integrated database retrieval system
