Naegleria gruberi: NAEGRDRAFT_50960
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Entry
NAEGRDRAFT_50960 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03022
Basal transcription factors
ngr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NAEGRDRAFT_50960
09124 Replication and repair
03420 Nucleotide excision repair
NAEGRDRAFT_50960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_50960
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_50960
Enzymes [BR:
ngr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NAEGRDRAFT_50960
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NAEGRDRAFT_50960
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NAEGRDRAFT_50960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
Helicase_C
ResIII
DEAD
DUF3638
Motif
Other DBs
NCBI-GeneID:
8851258
NCBI-ProteinID:
XP_002674455
JGI:
Naegr1_50960
LinkDB
All DBs
AA seq
818 aa
AA seq
DB search
MNNSQQEETNQTQHSNNPNPTNEKNEKKRRKSETKSKNKKTKYDNIENDTDSQISKQAEK
LATDIFKQKEGIQFDHSSMDLKSDHESRPIWVCSGDNGDYHIFMETNTPVYQQAYDFLVA
IAEPISRMENLHEYQLKEFSLYGAVSIGLTCDYIIQVLDKLSKVKLPTDLIDFIRKTTSK
YGSVKFVLQKNRFFLESPILQIIEKLRNDSVIGKAALIPNPNEFEYLDSSKRFIIKSKSN
QVEAFQKQTLISTNSNSLSNTMNEQHHVQKEMIGAINHSNYEEEYEDDNDLDSEPHETLY
SFEISSKSIESVKKQCIVIGHPTLDEYDFRNDKRNSSLVIDLKPTTTIRSYQEKSLNKMF
SNGRARSGIIVLPCGAGKTLVGVTAASTIKKHTLVLCINTVSVFQWKNQFRLWSTIDDDS
ILVHTSQQKATLPKDPNKAVVLITTYSMISFKGRRSEESKQMMEYIENREWGLLMFDEVQ
VYPADSFRASHLKAHCKLGLTATLLREDNKQEDLNFLIGPKLYEANWLDLQKKGHLANVQ
CVEVWCPMTAEFYAEYLSSNYAKQSLYYVMNPNKFRACEFLIRYHEKHGDKIIVFSDNTF
TLEQYAIKLKLPYIYGKTRESERLDVLNRFKSGNFNTVFLSKVGDTAIDIPEATVIIQIS
SHFGSRRQEAQRLGRILRPKNGTNKQAYFYSLVSQDTKEMFFATKRQQFLTNQGYSFRVL
ADIQKYYSSNRVETKFMKTKEDELEFLKLVKNAKDVNGKLEDIPNDDFQSGSHSGDTSLA
LLSGGANEVYYHTFEASNSSKKKKKVAKTVHPLFKKRN
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagccaacaagaagaaacgaatcaaactcaacattcgaataacccaaatcca
accaatgaaaagaatgaaaaaaagagaagaaaatcagaaactaaatcaaaaaacaaaaag
acaaaatatgacaatattgaaaatgatacagacagtcaaatctccaaacaagcagaaaag
ttggcaactgacattttcaaacaaaaggaaggaattcaattcgatcattcttcaatggat
ctgaaatcagaccacgaatcacgtccaatttgggtgtgtagtggtgataatggagattat
cacattttcatggaaactaacacaccagtttatcagcaggcttatgattttcttgtggcc
attgcagaaccaatctcacgtatggaaaatttacatgaatatcaattgaaagaattctca
ctttatggagctgttagtattggattgacttgtgattatattattcaagttttggacaag
ttgagtaaggttaaattaccaacagacttgattgattttattagaaagaccacttctaaa
tatggaagtgtgaaattcgtcttacagaagaatcgattctttctggaatctcctatttta
caaattatagaaaagttgagaaatgattcagttattggcaaagctgctctgataccaaat
ccaaatgaattcgaatatttggattcgagtaagcgtttcattatcaaatcaaagtctaat
caagttgaggcttttcaaaaacaaactctaatttcaacaaattcaaattctctttccaat
actatgaatgaacaacaccatgttcaaaaggaaatgattggagcaatcaatcattcgaat
tatgaagaagaatatgaagatgataacgatttggatagtgaaccacatgaaactctctat
tcattcgaaatttcatccaaatctattgaatctgtcaaaaagcaatgtattgtaattgga
cacccaactttggatgaatatgattttagaaatgataagaggaatagttcactcgtaatt
gacctcaaaccaaccaccaccattcgttcctatcaagaaaaatcactcaacaaaatgttc
agcaatggaagagctcgaagtgggatcattgttctaccatgtggtgcaggaaagacctta
gttggagtgacagctgccagcacaatcaagaaacacaccctagtactatgtatcaataca
gtgagtgtctttcagtggaagaatcaattcagattgtggagtaccattgacgatgatagt
attctagttcatacctcacaacagaaggccactcttccaaaagatccaaataaggccgtt
gtgttaatcaccacctatagtatgatttcatttaagggaaggagaagtgaagaatccaaa
caaatgatggagtacattgaaaatagagagtggggattgctaatgttcgatgaagttcaa
gtataccctgctgattcattcagagcatcccatttgaaagctcattgtaaattgggattg
actgcaactctattacgtgaggataacaagcaggaggatttaaatttcctcattggacca
aaactctacgaagccaattggttggatttacaaaagaagggacatcttgccaatgtacaa
tgtgtcgaagtttggtgtccaatgactgcagaattctatgccgagtatctttcctcaaat
tatgccaaacagagtttgtactatgtgatgaatccaaataagtttagggcttgtgaattt
ctcattagatatcatgaaaagcatggagataagataattgttttcagtgataataccttc
actctggaacagtatgccatcaaattgaaacttccttacatttatggtaaaaccagggag
tctgagcgtttggatgtcttgaatcgattcaagagtggtaattttaacactgttttcctt
agtaaggttggtgatacagccattgatattcctgaggcaactgtaattattcaaatttcg
tcccatttcggcagcagaagacaagaagctcagagattgggtcgtatccttcgtccaaag
aatggaaccaataagcaagcttacttttactcactcgtctcacaagacacaaaggaaatg
ttctttgcaaccaagagacaacaattccttaccaatcaaggatacagtttcagagttttg
gctgacattcaaaagtactactcgagtaatagagtggagaccaaatttatgaaaacaaaa
gaggatgaattggaatttctaaaacttgtcaagaatgctaaagatgttaatggaaaattg
gaagatattcccaatgatgactttcaaagtggcagccatagtggtgatactagtttggca
ttgctatcaggaggtgccaatgaagtgtattatcatacctttgaagcaagcaattcctca
aaaaagaagaaaaaggtcgctaaaactgtccatccattatttaagaaacgtaattag
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